Protein Model on 3tso_B_1_M_1 (TEMPLATE: 3tso )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) B 1 (B) polymer(polypeptide(L)) [167 aa] Ras-related protein Rab-25 :RAB25_HUMAN
2 b M 1 (B) non-polymer(GNP) PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 16D(E) 17S 18G 19V 20G 21K 22T 23S(N) 33F 34S 35N(H) 37Y(S) 39A(T) 40T 65A 66G 125N 126K 128D 129L 155S 156A 157K(L) (identity: 73.9 %/39.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3tso_B_1 identity=39.6%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :  **   * ****** *        **     ***  * *  **     *  ******* **      * ****    **** *   *      *  *  :
3tso_B_1      10:VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY: 109
SecStr          :EEEEEEES TTSSHHHHHHHHHHS   TT     SEEEEEEEEEETTEEEEEEEEEE    S  TTHHHHHTT  EEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbebbbbbbbeeeeeeeeeebeeeeebeeebebeebebebebebbbbeeeebeebeebbeebbbbbbbbbbbeeebbebbeebbeebe:    
Contact         :        bbbbbbbb         bbb b bb                        bb                                         

queryA       108:IQASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :  *             *** **   * * *  *       *     ****    *** ** *   :
3tso_B_1     110:DHAEA----TIVVMLVGNKSDLSQAREVPTEEARMFA-ENNGLLFLETSALDSTNVELAFETVLK: 169
SecStr          :HHS T----T EEEEEEE TT GGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHHHH:    
ExpBur          :eebee----ebbbbbbbbeeeeeeeeebeeeebeebb-eeeebebebbbbeeeeebeebbeebbe:    
Contact         :                 bb bb                          bbb                                                 


Input Residue Numbers for Focused Sites

ex) 2,15,123