Protein Model on 6if3_B_1_C_1 (TEMPLATE: 6if3 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) B 1 (B) polymer(polypeptide(L)) [177 aa] Ras-related protein Rab-35 :RAB35_HUMAN
2 b C 1 (B) non-polymer(GTP) GUANOSINE-5'-TRIPHOSPHATE 16D 17S 18G 19V 20G 21K 22T(S) 23S 33F 35N(G) 36Q(S) 37Y 39A(T) 40T 65A 66G 125N 126K 128D 155S 156A 157K (identity: 81.8 %/38.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6if3_B_1 identity=38.0%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *  * ******* **        **  *  *** **    *      *  ******* ***       ***      * ***    *     *  *  :
6if3_B_1      14:LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-: 112
SecStr          :EEEEEEEE TTSSHHHHHHHHHHS   S      SEEEEEEEEEETTEEEEEEEEEE SSGGG   HHHHHTT SEEEEEEETT HHHHHTHHHHHHHH-:    
ExpBur          :ebbbbbbbbeebbbeebbebebeeeeeeeeeebeeeeeeeeebebeeeebebebebbbbeeeebeeeeebbeebebbbbbbbbbeeebeebbeebbebb-:    
Contact         :        bbbbbbbb         b bbb bb                        bb                                         

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK: 175
                :                *** *   * *              *  *******  ***  *  *    * :
6if3_B_1     113:----NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR: 176
SecStr          :----HHH SS EEEEEEE    GGG  S HHHHHHHHHHHT EEEE BTTTTBSHHHHHHHHHHHHHH:    
ExpBur          :----eeebeebbebbbbbeeeeeeebebeeeebeebbeeeebebbbbbbeeeeebeebbebbbeebbb:    
Contact         :                 bb b                          bbb                                                  


Input Residue Numbers for Focused Sites

ex) 2,15,123