[pdbjlvh2]Protein Model on 5szi_A

Protein Model on 5szi_A_1 (TEMPLATE: 5szi )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RAB7A_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [174 aa]	Ras-related protein Rab-8A :RAB8A_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5szi_A_1 identity=41.9%

queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    ********          *      *** **       *      ***********     * ****    ** * *    *     *     :
5szi_A_1      10:LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE: 109
SecStr          :EEEEEEE STTSSHHHHHHHHHHS          SEEEEEEEEEETTEEEEEEEEEE  SHHHHHHHHHTTSS SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :bbebbbbbbeebbbeebbebbbeeeeeeeeeebebbeeeeeebebeeebbebbbbbbbbeeeeeeebbeebeebebbbbbbbbeebebbeebeebbeebe:    

queryA       108:IQASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN: 172
                :  **  * *      **** *    ***   *          *   *****  **** ** * ** :
5szi_A_1     110:EHASA-DVEK---MILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARD: 170
SecStr          :HHS T-T   ---EEEEE TT  TT  S HHHHHHHHHHH-T EEEE BTTTTBSHHHHHHHHHHH:    
ExpBur          :eebee-ebeb---bbbbbebeeeeeeebeeeebeebbeee-eeebbbbbbeeeeebbebbebbbee:

Protein Model on 5szi_A_1 (TEMPLATE: 5szi )

Input Residue Numbers for Focused Sites