[pdbjlvh2]Protein Model on 2wwx_A

Protein Model on 2wwx_A_1 (TEMPLATE: 2wwx )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RAB7A_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [170 aa]	RAS-RELATED PROTEIN RAB-1 :RAB1A_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2wwx_A_1 identity=39.6%

queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *******  *            *  *** **       *      ***********       ****     * ***    *     *  *  :
2wwx_A_1       8:LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID: 107
SecStr          :EEEEEEE  TTSSHHHHHTTSB      HHHHHH  SEEEEEEEETTEEEEEEEE  TTGGG  S  GGGTSS SEEEEEEETT HHHHHHHHHHHHHHH:    
ExpBur          :ebebbbbbeeebbbebbbeebeeeeeeeeeeeeeeeebebeebeeeeeebbbbbeeeeebeeebebeeebeeebebbbbbbbbbeeebbeebeebbebbe:    

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
                :  **    **      * * **    *              **  ***** * **** * * *:
2wwx_A_1     108:RYAS----ENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA: 166
SecStr          :HHS ----TTSEEEEEEEE  TTS   S HHHHHHHHHHHT  EEEEETTB HHHHHHHHHHH:    
ExpBur          :eebe----eebbbbbbbbeeeeeeeeebeeeebeebbeeeebebbebeeeeeeebbeebeebb:

Protein Model on 2wwx_A_1 (TEMPLATE: 2wwx )

Input Residue Numbers for Focused Sites