[pdbjlvh2]Protein Model on 1ky2_A

Protein Model on 1ky2_A_1 (TEMPLATE: 1ky2 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RAB7A_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [180 aa]	GTP-BINDING PROTEIN YPT7P :YPT7_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1ky2_A_1 identity=70.1%

queryA         3:SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS: 101
                :****  *****************  *** * * *************** ** *   *** ************************** ***    *    *:
1ky2_A_1       3:SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS: 102
SecStr          :      EEEEEE  TTS HHHHHHHHHHS   S      SEEEEEEEEEETTTEEEEEEEEEE  SGGG TTTTGGGTT SEEEEEEETT HHHHHTHHH:    
ExpBur          :eeeeeebbbbbbbbeebbbbbbbebbbeeeeeeeeeeeebbeeeeeebebeeeeebbbbbbbbbbeeebeeeeeebbeebbbbbbbbbbeeeebbeebee:    

queryA       102:WRDEFLIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176
                :******  *    ** **** ****** *     *  * **    *   ** * **** ****  **  *** ** *:
1ky2_A_1     103:WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ: 179
SecStr          :HHHHHHHHS  S TTTS EEEEEE TTS TTT  S HHHHHHHHHHTTS  EEEEBTTTTBSHHHHHHHHHHHHHHH:    
ExpBur          :beeebbeebebeeeeebbbbbbbbeeebeeeeeebeeeebeebbeebeebebbbbbbeeeeebeebbeebbebbbee:

Protein Model on 1ky2_A_1 (TEMPLATE: 1ky2 )

Input Residue Numbers for Focused Sites