Protein Model on 6yx5_A_1_F_1 (TEMPLATE: 6yx5 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [173 aa] Ras-related protein Rab-8A :A0A1U7REJ8_MESAU
2 b F 1 (A) non-polymer(LJN) [(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate 77F(Y) (identity: 0.0 %/41.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6yx5_A_1 identity=41.2%
queryA         3:SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW: 102
                :*    * *    ********          *      *** **       *      ***********     * ****    ** * *    *     *:
6yx5_A_1       1:SHMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW: 100
SecStr          :   SEEEEEEEE  TTSSHHHHHHHHHHS    S     SEEEEEEEEEETTEEEEEEEEEE  SGGGHHHHHTTTTT SEEEEEEETT HHHHHTHHHH:    
ExpBur          :eeeeeebebbbbbbeebbbebbbebbeeeeeeeeeeebebeeeeeeebebeeeebebebbbbbbeeebbeebeeebeebebbbbbbbbbeeebbeebeeb:    
Contact         :                                                                          b                         

queryA       103:RDEFLIQASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN: 172
                :       **  * *      **** *    ***   *          *   *****  **** ** * ** :
6yx5_A_1     101:IRNIEEHASA-DVEK---MILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARD: 166
SecStr          :HHHHHHHS T-T EE---EEEEE TT GGG  S HHHHHHHHHHT-T EEEE BTTTTBSHHHHHHHHHHH:    
ExpBur          :beebeeebee-ebbe---bbbbbebeeeeeeebeeeebeebbeee-ebebbbbbbeeeeebeebbbbbbeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123