Protein Model on 3tnf_A_1_B_1 (TEMPLATE: 3tnf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [170 aa] Ras-related protein Rab-8A :RAB8A_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [379 aa] LidA :Q5ZWZ3_LEGPH 10K 34S(N) 36Q(T) 37Y(F) 38K(I) 39A(S) 41I 42G 43A(I) 60Q 62W 67Q 69R 70F 72S(T) 73L(I) 77F(Y) 79R 91T 92A(N) 93P(E) 94N(K) 104D(R) 108I(E) 126K 131N(K) 132R 133Q (identity: 46.4 %/41.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3tnf_A_1 identity=41.9%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    ********          *      *** **       *      ***********     * ****    ** * *    *     *     :
3tnf_A_1       6:LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE: 105
SecStr          :EEEEEEE  TTSSHHHHHHHHHHS    S     S EEEEEEEEETTEEEEEEEEE   SGGG TTGGGGSTT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebebbbbbbeebbbeebbebbeeeeeeeeeeebeeeeeeeeebebeeeebebebebbbbeeeeeeebeeebeebebbbbbbbbbeeebbeebeebbeebe:    
Contact         :  b                       b bbbb bbb                b b    b bb bb   b b           bbbb         b   

queryA       108:IQASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN: 172
                :  **  * *      **** *    ***   *          *   *****  **** ** * ** :
3tnf_A_1     106:EHASA-DVEK---MILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARD: 166
SecStr          :HHS T-T EE---EEEEE TT GGG  S HHHHHHHHHHH-T EEEE BTTTTBSHHHHHHHHHHH:    
ExpBur          :eebee-ebbe---bbbbbebebeeeeebeeeebeebbeee-ebebbbbbbeeeeebeebbebbbeb:    
Contact         :b                 b     bbb                                                                         


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