CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [173 aa] | RAS-RELATED PROTEIN RAB4A :RAB4A_HUMAN | |
2 | b | B 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D(N) 17S(A) 18G 19V(T) 20G 21K 22T(S) 23S(C) 33F 65A 68E 125N 126K 128D 129L 155S 156A 157K(L) (identity: 66.7 %/37.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2bmd_A_1 identity=37.6% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107 :* * * * ** * * *** * * * * *********** * **** ** * * * * * *: 2bmd_A_1 10:LFKFLVIGNAGTGKSCLLHQFIEKKFKXXXXXXXXXEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----L: 105 SecStr :EEEEEEEE TTSSHHHHHHHHHHS ---------- EEEEEEEETTEEEEEEEEE TT TTTTT SHHHHTT SEEEEEEETT HHHHHTHHHH----H: ExpBur :ebbbbbbbeeebbbeebbebbeeeee----------eebebebebeeeebebebebbeebbeeebeeeebbeebbbbbbbbbbbeeebbebbeeb----b: Contact : bbbbbbbb b b b queryA 108:IQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL: 182 : * * *** ** * * * * **** *** ** ** * **: 2bmd_A_1 106:TDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA-QENELMFLETSALTGENVEEAFVQCARKILNKIESGEL: 180 SecStr :HHHHHHT TT EEEEEEE TT GGG S HHHHHHHH-HHTT EEEE TTT TTHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeebbeebbbbbbbbeeeeeeeeebeeeebeebb-eeeebbbbbbbbeeeeebeebbbebbeebbeeeeeeeb: Contact : bb bb bbb |