Protein Model on 5y3m_F_1_B_1 (TEMPLATE: 5y3m )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) F 1 (B) polymer(polypeptide(L)) [732 aa] Toll-like receptor 9 :TLR9_BOVIN
2 b B 1 (E) polymer(polydeoxyribonucleotide) [4 base] DNA (5'-D(*TP*CP*GP*T)-3') 420S(D) 422I(Y) 449G 450Q(V) 454G 455L(H) 482L(R) 483Q(V) (identity: 25.0 %/31.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5y3m_F_1 identity=31.0%
queryA       360:LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF: 459
                :*    *    *   *** *  *  * **    *        ** *    *  * *  **        *  *  ** ***  *       *    *    *:
5y3m_F_1     455:LDLSRNNLVTIQQEMFTRLSRLQCLRLSHNSIS-QAVNGSQFVPL--TSLRVLDLSHNKLDLYHGRSFTELPQLEALDLSYNSQPFSMQGV---GHNLSF: 548
SecStr          :EE  SS  SS  GGGGTT TT  EEE TTS   -    SSSSTT --TT  EEE  SS      TTTTTT TT  EEE TT  TGGGSTT ---    GG:    
ExpBur          :bbbbebebeebeeebbeebeebebbebbebebe-bebebebbebb--eebebbbbbebebebeeeebbebbeebebbebbebeebbeeeee---ebebeb:    
Contact         :                                                            b b                          bb   bb    

queryA       460:EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--------------FQPLRNLTILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLAR: 544
                :   *    ** *  *      *     *    *   * *                 *  ****  **** *         *  * * *  * *  **** :
5y3m_F_1     549:VAQLPSLRYLSLAHNG---IHSRVSQKLSSASLRALDFSGNSLSQMWAEGDLYLCFFKGLRNLVQLDLSENHLHTLLPRHLDNLPKSLRQLRLRDNNLAF: 645
SecStr          :GGG TT  EEE TTS ---  SSS S  EESS  EEE  SS HHHHHTSTTTTTTTTTEETT  EEE  SS  S   HHHHHTS TT  EEE TT   S :    
ExpBur          :beebeebeebbbbebe---beeebbeebebebbebbbbbbbbbeebbeeeeebeebbeebeebbebbbbebebeebeeebbebbbebbeebebeebebee:    
Contact         :                      bb                                                                            

queryA       545:L-WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR: 643
                :  *           *  *  *  * *  *               *   *   *         *     *  ***  *    *    **     *  **  :
5y3m_F_1     646:FNWSS---------LTVLPRLEALDLAGNQLKALSNGSLPPGIRLQKLDVSSNSIGFVIPGFFVRATRLIELNLSANALKTVDPSWFGSLAGTLKILDVS: 736
SecStr          :  GGG---------GGG TT  EEE TTS   EE SS S TT    EEE TTS   EE TTSSTT TT  EEE  SS  S   GGGTTTHHHH SEEE  :    
ExpBur          :bebeb---------beebeebebbbbbbbebebbbeeebbeebebeebbbbebebeebeeebbeebeebeebebbebebeebeeebbeebbeebeebbbb:    

queryA       644:FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG: 685
                : **  *       **    *     * **    *  *    *:
5y3m_F_1     737:ANPLHCA--XXXAFVDFLLERQEAVPGLSRRVTCGSPGQLQG: 776
SecStr          :S  EE  ----- HHHHHHHTGGGSTTTTTTSBEEESTTSTT:    
ExpBur          :ebebebe-----ebeebbbeeeebbebbbeebebbeeeebee:

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