Protein Model on 3rg1_E_1_Y_1
(TEMPLATE: 
3rg1
)Protein Model on 3rg1_E_1_Y_1
(TEMPLATE: 3rg1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | E 1 (B) | polymer(polypeptide(L)) [599 aa] | CD180 molecule :A6QNK7_BOVIN | |
| 2 | b | Y 1 (Y) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 465Y 484R(L) 486M(D) 488R(A) 510I(V) 512D(N) 534I(H) (identity: 14.3 %/30.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3rg1_E_1 identity=30.0% |
queryA 27:KCTV--SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN: 124
:*** * * * ** ** ** * * * * * ** * * * * * * :
3rg1_E_1 6:KCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKF: 105
SecStr : EEEETTTEEE TTS SS TTS TT EEE S SEE TTTTSS TT SEEE TTS EE TTTTTT TT EEE TT EE TTTT S :
ExpBur :ebeeeeeeebbebeeeeeeebeeebeeebeebbbbebebeebeeebbeebeebeebbbbebebeebeeebbeebeebebbbbebbebeebbeebbbebee:
queryA 125:LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF: 224
:* * * * * ** * * * ** * ** * ** * * * ** ** * * *:
3rg1_E_1 106:LKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAF--ISKIF: 203
SecStr : EEE TTS GGGS TT TT SEEE TTSS TT TT EEE SS EE HHHHHTTTT SSEEEE TT EE TTTT-- STTE:
ExpBur :bbebebeebebeebeebbeebbeebebbbbbebebeebebbeebebeebbebbbeebebeebbeebbeebeebeebebbbbebebebbeebbb--ebebb:
queryA 225:GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--F: 322
: * ** ** * ** * * ** * * * * ** :
3rg1_E_1 204:----QSLKFGGSL--------------NLFI-----------IFKGLQNSTLQSL----------------WLGTFED-----TDDQYLTSATFEGLCDM: 253
SecStr :----EEEE TT S-------------- HHH-----------HHHHT S EEEEE----------------E TT-----S B GGGGGGGGGS:
ExpBur :----ebbebbbbe--------------ebee-----------bbbbbeebebeeb----------------ebbbeee-----beebebeeebbebbeeb:
queryA 323:NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC---LEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNK: 418
: * ** * * * * * * * ** * * *** * * ** * * * :
3rg1_E_1 254:SVESINLQKH------------RFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI-EGMNSLKKLVLNANSFDQLCQINAASFPSL--RDLYI----KGN: 334
SecStr :EEEEEE TT ------------ BSS GGGGTT TT SEEE TT S S -STTTT EEE TT SBGGGG GGG TT -- EEE ----TT :
ExpBur :ebeebbbeeb------------bbeeeeeebbebbeebeebebbbbebeebbeeb-ebbeebeebbbbebbbeebeebebebbeeb--ebbbb----eeb:
queryA 419:ISKIE--SDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN: 515
: * * * *** * * **** * * * * * * * * **** * * * ** :
3rg1_E_1 335:MRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL-HVKAPHSPFQNLHLLRVLNLSH: 433
SecStr :SS BB SSSSTT TT EEE TTS B EEEESTTTTTT TT EEE S S EEE TTTTTT TT EEE TT E-E TT TTTT TT EEE TT:
ExpBur :eeebebeebbbeebbebeebbbbebebebeebbbebbeebbebeebbbbebeebbbeeebbeebeebeebebbebeb-eeeeeebbbeebeebebbebbe:
Contact : b b b b b b
queryA 516:NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY---FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL: 612
: * * ** * * ** * * * * * ** * * * * * ** * * *:
3rg1_E_1 434:CLLDTSNQHLLAGLQDLRHLNLQGNSFQ--------DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL: 525
SecStr :S BTT TTSSTT TT EEE TT B G--------GGEE SS TTTT TT SEEE TTS EE TTTTTT S EEE SS GGGGGGGTT S :
ExpBur :bebebebeebbbbbeebeebbbebbebe--------ebebeeebbbeebeebeebbbbebebeebeeebbeebeebeebbbbebebebebbebbeebeeb:
Contact : b
queryA 613:KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFD: 692
: ** * * ** ** **** * * * * * * * ** * * * *:
3rg1_E_1 526:Y-LNMASNNIRIIPPHLL-PALSQQSIINLSHNPLDCTCSNI-HFITWYKENLHKL-EDSEETTCANPPSLRG--VKLSD: 599
SecStr :E-EE SS GGGH-HHHHTSSEEE SS EE SGGGH-HHHHHHHHTGGGB-TTGGG BEEESGGGTT-- BGGG:
ExpBur :e-bbbbebebeebbeebb-ebbeebeebbbbebebbbeeebe-ebbebbeebeeeb-eebeebebbeeeeeee--eebee:
|
[assembly_id:1]
[help]