[pdbjlvh2]Protein Model on 7wm4_D_1_TA

Protein Model on 7wm4_D_1_TA_1 (TEMPLATE: 7wm4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	D 1 (F)	polymer(polypeptide(L)) [668 aa]	Toll-like receptor 3 :TLR3_MOUSE
2	b		TA 1 (F)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	289V 290G 291N (identity: 100.0 %/78.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7wm4_D_1 identity=78.4%

queryA        27:KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT: 126
                : ***   **********  ***** ****************  ********  ** *** ********** ** ************* ** ** ******:
7wm4_D_1       3:QCTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLT: 102
SecStr          :    TTTEEE  S    S    S    SEEE TTS  S   SSTTSS    SEEE  S   S   THHHHH SS  EEE  S       SGGGSS  S  :    
ExpBur          :eeeeeeeebebeeeeeeebeeeeeeebeebbbbebebeebbeeebeebeebeebebbebebeebeeebbeebeebeebbbbebebeeeebebbeebeebb:    

queryA       127:ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL: 226
                :** ****** *** ***  ***** *************** ***********  *** ** ****    **** ** ****  ********  ** ** *:
7wm4_D_1     103:ELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFAL: 202
SecStr          :EEEESS       S TTSS SS  EEEE SS  S     SS   SS  EEE  SS   EE TTTSTT SS EESEEE TT    EE TTTTTTSSEE EE:    
ExpBur          :ebbbeebebeeeeebbbeebeebebbbbbebebeebebbeeebbeebeebebbebebebbeeebbebbeebebeebbbbebebeebeebbbeebeebebb:    

queryA       227:FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY: 326
                : *** ** * ****** ** **** **** * **  **  ** ******** ********  *** **  ** * *  ******* *   *  ** * **:
7wm4_D_1     203:LLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRY: 302
SecStr          :E TTS   HHHHHHHHHHTSS    EEE  SS   EE TTTTGGGGGS  SEEE TTS   EE TTTTTT SS  EEE  S    EE TTTTTT SS  E:    
ExpBur          :bbeebebeeebbeebbebbbebebeebbbbebebeebeeebbbbbeebebbebbbbebebeebeebbbbebeebeebbbeebebeebbeebbebbeebee:    
Contact         :                                                              bbb                                   

queryA       327:LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA: 426
                :* *** ***** **** * ********** ** *** ** **  *** ****  *******  **** ***************  ****** ****    :
7wm4_D_1     303:LSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGT: 402
SecStr          :EE TT S    SSS    EE TTSSTT SS  EEE TT  B    TTSSTT SS  EEE TT BSS  EE TTSGGGGGS    EEE TTS   EE TTT:    
ExpBur          :bbbeebbbeeeeeeeeebebeeebbebbeebeebbbbebbbbebeeebbbbbeebeebbbbebbeebeebeeebbebbeebebeebebbebebeebeebb:    

queryA       427:FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML: 526
                :***** *  ******** * * ******* ***************   ********************** ***** ******************* * *:
7wm4_D_1     403:FSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL: 502
SecStr          :TTT TT  EEE  S   EEE  SGGGTT SS  EEE  S SEEE  TTTTSS     EEE TTS EE    SS TTSS     EEE TTS      TTTT:    
ExpBur          :beebbebebbbbbebebebebebebbeebeebebbebbebeebbbbeebbeebeebbebbbeebebeebeeeebbbbebeebbebbbbebebeebeeebb:    

queryA       527:EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE: 626
                :**** ***** *********   *****  ***************** ***** *** ***** * ******* *    *  * ** *************:
7wm4_D_1     503:EGLENLEILDFQHNNLARLWXXXNPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVE: 602
SecStr          : S TT  EEE  S   GGG ---  SS    S S TT  EEE  SS   B  SSSSTT  S  EEE  SS   B  TTS SS TT  EEE TTS      :    
ExpBur          :eebeebeebbbbebebbebb---eeeeebebbeebeebeebbbeebebeebbeebbeebeebbbbbbbebebeeeeeebbebbeebeebbbbebebeebe:    

queryA       627:KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                :* **** * **  *************** ******* ***** *** ******* ** ***  ********:
7wm4_D_1     603:KDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCK: 673
SecStr          :HHHHTGGGSS SEEE  S  EE SHHHHHHHHHHHHT   B TTTTTS  EEESSTTTT  SSS   TT  :    
ExpBur          :eebbbebbeebeebbbbebebebeeebbbebbebbeeeebebeebeeebebeeeeeeeeeebeebebeebe:

Protein Model on 7wm4_D_1_TA_1 (TEMPLATE: 7wm4 )

Input Residue Numbers for Focused Sites