Protein Model on 7wm4_C_1_Y_1 (TEMPLATE: 7wm4 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) C 1 (E) polymer(polypeptide(L)) [661 aa] Toll-like receptor 3 :TLR3_MOUSE
2 b Y 1 (Y) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 398N 399E 429W (identity: 100.0 %/77.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7wm4_C_1 identity=77.8%
queryA        28:CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE: 127
                :***   **********  ***** ****************  ********  ** *** ********** ** ************* ** ** *******:
7wm4_C_1       4:CTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE: 103
SecStr          :    SSB   SS    S    S S  SEEE  SB  S   SSTTSS    SEEE  SB      TTHHHH  S  EEE  S       GGGGSS     E:    
ExpBur          :eeeeeeebebeeeebeebeeeeeeebebbbbbebebeebbeeebeebeebeebebbebebeebebebbeebeebeebbbeebebeebeeebbeebeebbe:    

queryA       128:LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF: 227
                :* ****** *** ***  ***** *************** ***********  *** ** ****    **** ** ****  ********  ** ** * :
7wm4_C_1     104:LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL: 203
SecStr          :EEESS       S TTSS  S  EEEE SS        SS B TT  EEE  SS   EE TTTSTTBSS EESEEE TT    EE TTTTTTSSEE EEE:    
ExpBur          :bbbbebebeeeeeebbeebeebeebbbbebebeebebbeeebbeebebbebbebebebbeeebbebbeebbbeebbbbebebeebeeebbeebeebebbb:    

queryA       228:LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL: 327
                :*** ** * ****** ** **** **** * **  **  ** ******** ********  *** **  ** * *  ******* *   *  ** * ***:
7wm4_C_1     204:LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL: 303
SecStr          : TTS   HHHHHHHHHHTTTS   EEE  SS   EE TTSSGGGGGS  SEEE TTS   EE TTSSTT SS  EEE  S    EE TTTTTT  S  EE:    
ExpBur          :beebebeeebbeebbebbbebebeebbbbebebeebeeebbbbbeebebeebebbebebeebeebbbeebeebeebbbeebebeebbeebbeebeebeeb:    

queryA       328:NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF: 427
                : *** ***      * * ********** ** *** ** **  *** ****  *******  **** ***************  ****** ****    *:
7wm4_C_1     304:SLKRAFTKXXXXXXSHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF: 403
SecStr          :E TT S  ------   EE TTSSSS TT  EEE  S  B    TTSSTT SS  EEE TT BSS  EE TTTTGGGTTS  SEEE TTS   EE TTTT:    
ExpBur          :bbeebbbe------eebebeeebbeebeebeebbbbebebbebeeebbeebeebeebbbbebbeebeebeeebbebbeebebeebebbebebeebeebbb:    
Contact         :                                                                      bb                            

queryA       428:SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE: 527
                :**** *  ******** * * ******* ***************   ********************** ***** ******************* * **:
7wm4_C_1     404:SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE: 503
SecStr          :SS TT  EEE  SS  EEE  SGGGTT  S  EEE  S SEEE  TTSSSS TT SEEE TT        SS TTTT  S  EEE  SS      TTTTT:    
ExpBur          :eebbebebbbbbebebebebebebbeebeebeebebbebeebbbbeebbeebeebeebbbeebebeebeeeebbbeebeebbebbbbebebeebeeebbe:    
Contact         : b                                                                                                  

queryA       528:GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK: 627
                :*** ***** *********   *****  ***************** ***** *** ***** * ******* *    *  * ** **************:
7wm4_C_1     504:GLENLEILDFQHNNLARLWXXXNPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEK: 603
SecStr          :T TT  EEE  S   TTT --- TT     S S TT  EEE TTS   B  SSSSTT TT  EEE  SS   B  TTS SS TT  EEE TTS      H:    
ExpBur          :ebeebeebbbbebebeebb---eeeeebebbeebeebeebbbeebebebbbeebbeebeebebbbbbebebeebeeebbebbeebeebbbbebebeebee:    

queryA       628:KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                : **** * **  *************** ******* ***** *** ******* ** ***  ********:
7wm4_C_1     604:DVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCK: 673
SecStr          :HHHTGGGSS  EEE  S  EE STTTSHHHHHHHHT   EETTTTTS  EEESSTTTT  SSS   TT  :    
ExpBur          :ebbbebbeebeebbbbebebebeeebbbebbebbeeeebebeebeeebebeeeeeeeeeebeebebeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123