Protein Model on 4r07_C_1_K_1
(TEMPLATE: 
4r07
)Protein Model on 4r07_C_1_K_1
(TEMPLATE: 4r07
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [738 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | K 1 (K) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 175E(K) 177L(F) 179S 199L 203E(D) 205S 252N(Y) 254S(N) 406H 407S (identity: 50.0 %/31.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4r07_C_1 identity=31.2% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
: * ** * ** * * * * * ** * * * * * * * * :
4r07_C_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr :EEE SS SS S TT EEE TTS EE TTTTTT TT EEE TTTT ------------ EE TTTTTT SS EEE SS SS S---:
ExpBur :ebebeebebeebbeebeeebeebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebebbbbbebebeebbe---:
queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
: **** * * * * ** * * * * * * * *** * * :
4r07_C_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr :S TT SEEE TTS EE HHHHTT TT EEE SSS TT- EE TTTTTT TT EEE SS SS S TT SEEE TTS EE TTT:
ExpBur :ebbebbbebbbbbbebeebbeebbbebeebebbebbbbbbee-eebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee:
Contact : b b b
queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
: * * * ** * * ** * * * * * * ** * * * *** * * :
4r07_C_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr :TTT TT E--EE TTS-----S TT SS -----SGGG EE TTTTTT TT EEE TTS S GGGGTT T--T EEE SS HHHH:
ExpBur :beebeebbb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebe--ebebbbbbebebeebb:
Contact : b b b b b
queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
: ** ** * * * ** * * * * * * * *** * * * * * * * **:
4r07_C_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr :HS GGGGG TT EEE S TT SS GGGGG TT EEE -TT SEE------ GGGGGGGTT TT EEE SS EE GGGGGG SS :
ExpBur :eebebbeebeebeebbbbebbeeeeeeeebebbeebeebeebebbbb-bbbbbeeb------ebebbebbbebeebebbbbbebebeebebebbeebeeb:
queryA 382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446
: ** * * ** ** * * * * * * * * * * * :
4r07_C_1 399:EIIYLSENRISPXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498
SecStr : EEE SS ------------------------- SS TTS SSS S SS HHHHTTS EEE TTS S TTTTTT SEEE TTS :
ExpBur :ebbbbbebebee-------------------------eeebebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe:
Contact : bbbbb
queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533
:* * * *** ** * * * * * * * ** * ** *** * ** *:
4r07_C_1 499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590
SecStr : S TTTTSTT -------- EEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TTS SS EESS E:
ExpBur :bebebbeebeeb--------ebbbbbebebebeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebbbeebbeeeebebebbee:
queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592
: * * ** * *** * * * * ** * * * ** * * :
4r07_C_1 591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688
SecStr :EE- TTS HHHHT- TT TTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S HHHH:
ExpBur :bb-bbbbebeebb-eeeeeebbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeeb:
queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE-KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682
: * * ** *** * * ** * * *** *** * * * * ** * * * :
4r07_C_1 689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINXXXXXXXTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786
SecStr : S EEE SS TTTTTT SS EEE TTS S ------- EEE TT EE SGG-GHHHHHHHHH TTSB GGG-SBEEESTT:
ExpBur :bebbebbbbbebebeebeeebeeebebbeebbbbebebebbe-------eeeebebbbbeebebebeee-bbebbeebeeeeebebbebbe-bebeeeee:
queryA 683:YHG: 685
: *:
4r07_C_1 787:QRG: 789
SecStr :TTT:
ExpBur :bee:
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[assembly_id:2]
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