Protein Model on 5ijc_C_1_I_1 (TEMPLATE: 5ijc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) C 1 (B) polymer(polypeptide(L)) [593 aa] Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU
2 b I 1 (I) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 47D 73R(N) (identity: 50.0 %/27.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ijc_C_1 identity=27.9%
queryA        37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
                :*   **  **** *       *  * *  *    *   * *  **     *   *      *  *  * *  *     *   *   * *  *        :
5ijc_C_1      55:CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA: 154
SecStr          : TTS  SS  S S TT  EEE TT    EE TTTTTT TT  EEE TT    EE TTTTSS TT  EEE TT       TTTTTT TT  EEE TTS   :    
ExpBur          :beeeebeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbebeebeeebbeebeebebbbbbebebe:    
Contact         :          b                         b                                                               

queryA       137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
                :     *      *  *   **   * **      * **    ** * **      *            *  * * *       *  *  *  * *     :
5ijc_C_1     155:SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NF: 252
SecStr          : STT   TT TT  EEE  SS        GGGGS TT  EEE  SS   EE TTTTHHHHH TT   EEE TT    EE TTSSTT -EEEEEEEES-  :    
ExpBur          :ebeebebbebeebeebebbebebeebebbebbeebeebebbbbbebebeebeeebbebbeeeeeeebbbbbbbbebeebeeebbeeb-ebebbbbeb-bb:    

queryA       234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL-: 327
                :  *   * **  **      * *        *         **         * * *                               ** *     ** :
5ijc_C_1     253:NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-------------DFSDDIVKFHCLANVSAMSLAGV-SIKYLE: 338
SecStr          :SSHHHHHHHHHTTTT EEEEEEEE  TTS   S   GGGGTTGGGSEEEEEEE   S-------------S  TTSTT GGGTT SEEEEES -      :    
ExpBur          :eeeeebeebbebbbebebebbbbbbeeeeebbeebeeebbebbeebebeebebbbbe-------------ebeeebbebebbbebebbbbbbb-ebeebe:    

queryA       328:NLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD: 425
                :     *  ** *     *          ** *  * *    *   *      *  * ** **    *           *    *  * *  *    * * :
5ijc_C_1     339:DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-LTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNG-AIIMSA: 430
SecStr          :   TT    EEEEES   SS      SS  EEE-EES SS  B   ----   TT  EEE  SS  BEEEE -- GGGT  S   EEE  S S-EEEE S:    
ExpBur          :ebeeebebeebbbeebebeebbebebeebeebb-bbebeeebebee----bebeebeebbbbebebebeebb--beebbbbeebeebbbbebe-ebebeb:    

queryA       426:AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525
                : *  *  *  **                 **       **          *    **  *       *        *    *** ****      *    :
5ijc_C_1     431:NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGV: 529
SecStr          :  TT TT  EEE TTSEEESGGGTTTTTT TT  EEE TTS  EE  TTTTTT TT  EEE TT EEGG-GEE S  TT TT  EEE TTS   EE TTT:    
ExpBur          :ebebbeebeebbbeebebeebbeebbbebbeebebbbbbebebebeeebbbebbeebebbebbebbbee-eebbebbeebeebbebbbbebebeebeebb:    

queryA       526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
                :   *  *  *   ****                        * * *             *  **   *  * *   *   *    **    *        :
5ijc_C_1     530:FDTLHRLQLLNMSHNNL------------------------LFLDSSHYNQ--------LYSLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT------: 591
SecStr          :TTT TT  EEE  SS  ------------------------    GGGGSS-------- TT  EEE  SS      TTTTTT TT  EEE  S------:    
ExpBur          :beebeebebbebbebeb------------------------eebeebbbee--------bebbeebbbbebebebbeeebbeebeebeebebee------:    

queryA       626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 663
                :                   ** ** *  *     * * :
5ijc_C_1     592:-------------------NPWDCSCPRIDYLSRWLNK: 610
SecStr          :-------------------S B   TTTSHHHHHHHHH:    
ExpBur          :-------------------bebeeeeeebebbbebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123