Protein Model on 6zjz_B_1_T_1 (TEMPLATE: 6zjz )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) B 1 (B) polymer(polypeptide(L)) [740 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b T 1 (B) non-polymer(FMT) FORMIC ACID 331R 389S(F) 390F(Y) 391T(H) 392S(F) (identity: 20.0 %/30.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zjz_B_1 identity=30.7%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
6zjz_B_1      20:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGXXXLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 116
SecStr          :EEE  SS  SS  S   TT  EEE  SS   EE TTSS  ---  EEE  S   -------------  EE TTSSTT TT  EEE  SS  SS  S---:    
ExpBur          :ebebeebebeebbeeeeeebeebebbebebeebeeebbee---eeebbbbebee-------------ebebeebbbeebeebeebbbbebebeebbb---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
6zjz_B_1     117:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 215
SecStr          :S  TT SEEE TTS   EE HHHHTT TT SEEE  SSBSSS-SS    EE TTTTTT TT  EEE  SB  SS  SS  TT  EEE TTS   EE TTT:    
ExpBur          :ebbeebeebbbbbbebeebbeebbbebeebebbbbbbbbeee-eebeebebeebbbeebeebebbbbbbbbbeebbeebbeebeebebbbbebeebeeee:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
6zjz_B_1     216:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 301
SecStr          :TSS TT  E--EE TTS-----S  GGG SS    ----- GGG   EE TTTTSS TT  EEE TTS  S   GGGGTT T--T  EEE  SS  HHHH:    
ExpBur          :beebeebbb--bbbbbb-----bbbeebeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebe--ebebbbbbbbebbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
6zjz_B_1     302:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 394
SecStr          :HS SGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE -TT   SEE------ TTTTGGGGG TT  EEE  S    EE GGGGGG SS :    
ExpBur          :eebebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:    
Contact         :                                                b                                                   

queryA       382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
                :    *                                       **     * *               * *  * *  *    *  *     * *  * :
6zjz_B_1     395:EIIYLSENRISPLVXXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 490
SecStr          : EEE TT       --------------------------  TTS SSS  S SS HHHHTTS E----EE  SSS SS  TTTTTT    SEEE  SS :    
ExpBur          :ebbbbbebebebee--------------------------eebeeeebbeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebe:    
Contact         :                                              bbbb                                                  

queryA       443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
                :  * * * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **  :
6zjz_B_1     491:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 582
SecStr          :   B  S TTTTSTT --------SEEE  SS  B  STTTTTT TT  EEE  S   SS  S   B  GGGGG SS  EEE TT     BSS  S EES:    
ExpBur          :bebebeeebbeebeeb--------ebbbbbebebbbeebebbebbeebbbbbbbebebeeeeeeeebbbebbeebeebeebebbebebebbeebeebebe:    

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
                :   *      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                 :
6zjz_B_1     583:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 680
SecStr          :S  EEE- TTS HHHHH-T TT TTTTTTTEETT  EEE TTS  S   HHHHHTS TT SEEE  SS      GGGGGG TT  EEE  SS      S :    
ExpBur          :bbeebb-bbbbbbbebb-ebeeeebbbbbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebebbbbeebebeebbee:    

queryA       593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
                :            *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     * :
6zjz_B_1     681:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALXXXXXXKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 778
SecStr          :HHHH SS  EEE  SS      TTSTTT TT  EEE  SS  S   STT ------   EEE TT  EE SGG-GHHHHHHHHH TTSB   GGG-SBEE:    
ExpBur          :beebbebbeebbbbebebeebbebbbeebebbebbbbbebebeebeeebe------ebeebbbbebebebeee-bbebbebbeeeeebebeebbb-bebe:    

queryA       679:TPPHYHGFPVRLFDTSSC: 696
                : *    *          *:
6zjz_B_1     779:SPGDQRGKSIVSLELTTC: 796
SecStr          :ESTTTTTSBTTSS GGG :    
ExpBur          :eeeeeeeebbbebeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123