[pdbjlvh2]Protein Model on 5gmg_B_1_O

Protein Model on 5gmg_B_1_O_1 (TEMPLATE: 5gmg )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [762 aa]	Toll-like receptor 7 :B3Y653_MACMU
2	b		O 1 (B)	non-polymer(PO4)	PHOSPHATE ION	583K(R) 607N (identity: 50.0 %/34.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5gmg_B_1 identity=34.6%

queryA       358:EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN: 457
                :  *    * *  ***  *  *  ** * **    *  **    *  **   *  *    *      * **  *  *****   *              * :
5gmg_B_1     474:QTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLIS-QTLNGSEFQPLAE--LRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNS--------HYFQSEG: 562
SecStr          :SEEE  SS      GGGGTT TT SEEE TT    -    S SSTT TT--  EEE  SS      TTTTTT TT  EEE TT  --------GGGGSTT:    
ExpBur          :ebbbbbebebeebeeebbeebebbbbbbbbebebe-bebebebbeebee--bebbbbbebebbbeeeebbebbeebebbbbbebe--------eebeeee:    

queryA       458:IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI----LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG: 553
                :*    *   * *            ** **          *       ** *      **       *        * *** **   * *  *      * :
5gmg_B_1     563:ITHM-LNFTKNLKV----------LQKLMMNDNDISSSTSRTMESESLRTLEFRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGM: 651
SecStr          :    -TTTTSS TT----------  EEE TT      SS    BSS  EEE  SS HHHHT TT  TTTTTTTTBTT  EEE  SS  S   TTTTTTS:    
ExpBur          :eebb-bebbeebee----------beebbbbebebeebebeebebebbebbbbebbebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebb:    

queryA       554:PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR------------------: 635
                :*         *  * *  **      *    *  *   **  * * * *    *   *** * *  * * *  *     **                   :
5gmg_B_1     652:P-------PNLKNLSLAKNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERLSNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTS: 744
SecStr          : -------TT  EEE  SS      GGGGGG TT  EEE  SS      S GGGT SS  EEE  SS   S  TTTTTT TT  EEE  SS      TTT:    
ExpBur          :b-------eebeebbbbebebeebebeebeebeebebbebbebebeebbeebbebbebbeebbbeebebeebbeebbeebeebeebbbbebbbeebeeeb:    
Contact         :                             b                       b                                              

queryA       636:-------NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696
                :       **  *    * * ***    *** *   *   ** *     *  *    *  *   *   *:
5gmg_B_1     745:FPENVLNNLKMLLLHHNRFLCTCDAV-WFVWWVQHTEVTIPYLATDVTCVGPGAHKGQSVISLDLYTC: 811
SecStr          :S HHHHTT SEEE  S  EE SGGGH-HHHHHHHH  SB TTTTTT BEEESGGGTT BTTT   TT :    
ExpBur          :bbeebbeebeebbbbebebebeeebe-bbbebbbbbebebeebeeebebebeeeeeeeebbebebeee:

Protein Model on 5gmg_B_1_O_1 (TEMPLATE: 5gmg )

Input Residue Numbers for Focused Sites