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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [753 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
2 | b | M 1 (M) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 248T(S) 249S(H) 275N (identity: 33.3 %/30.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5zln_B_1 identity=30.3% |
queryA 32:HEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------------LEPELCQKLPMLKVLNLQHNELSQ--: 113 :* ** * * ** *** * * * * * * * * * ** * *** * : 5zln_B_1 15:HGLVDCNWLFLKSVPRFSAAASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWNCPPTGLSPLHFSCHMTIEPRTFLAMRTLEELNLSYNGITTVP: 114 SecStr :GGEEE TTS SS TT S TT EEE TT EE TTTTGGGTT SEEE TTSB GGGSTT EE TTTTTT TT EEE SB SS : ExpBur :eeebebeeeebeebbebeebeebeebbebbbbbbebeebeeebbeebeebeebebeebbebeebbeeeeebebeeeeebbbebeebeebebbebbbeebb: queryA 114:------------------LSDKTFAFCTNLTELHLMSNSIQK------IKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK: 187 : * * * * * * * * ** * * * * ** * * ** * * * * : 5zln_B_1 115:RLPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSNLTHLSLKYNNL--TKVPRQLP-PSLEYLLVSYNLIVKLG: 211 SecStr : TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS --SS SS -TT SEEE SS EE : ExpBur :ebbeebbebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeebbbeebeebbebbbeebeb--eebbeebb-eebeebebbbbebeebb: queryA 188:SEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL: 286 : * * ** ** * * * ** * * * * * * * * * ** * **** * *: 5zln_B_1 212:PEDL---ANLTSLRVLDVGGNCRR-----CDHAPNPCIECGQKSLHLHPETFHHL------SHLEGLVLKDSSLHTLNSSWFQGL--VNMSVLDLSENFL: 295 SecStr :GGGG---TT TT SEEE TTSS -----GGG SS SSSS EE TTTTTT ------TT EEE SS S GGGGTT --TT EEE TTSS : ExpBur :eebb---eebeebeebbbbbbbbb-----eeeeeeeeeebeeebbebeeebbeeb------eebebbbbebbbbeebeebbbeeb--eebbebbbbbbbb: Contact : bb b queryA 287:--NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLK----RSFTKQSIS-LASLPKIDDFSFQW-------------LKCLEHL: 360 : * * * * * ** * ** ** * ** *** * * : 5zln_B_1 296:YESIQHTNAFQNLTRLRKLNLSFNYRKKVSFARLHLASSFKNLVSLQELNMNGIFFRSLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFV: 395 SecStr :TTHHHH TTTT TT EEE TT TT BS GGGGG TT EEE TT BSEE TTTTGGGTT TT EEE SS EE GGGGGT SS EE: ExpBur :bebbbebebbeebeebeebebbbbbeeeeebeebebbebbeebeebeebbbbbbbbebbbeebbeebbebeebbbbbbbebebebbbbbbbeebeebeeb: queryA 361:NMEDNDIPGIKS------NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG: 454 : ** * * * * * * * * * * * * * * * : 5zln_B_1 396:DLSDNRISGPSTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNFMDRCKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVQGSQFLP: 495 SecStr :E SS SS ------------------------------ GGGGGTT S EEE SS SS GGGGTT TT EEE TTS S SSTT: ExpBur :bbbebebebeeeee------------------------------eebbeebeeeebbbbbbebebeebebebbeebeebbbbbbbebebebebebebbee: queryA 455:LENIFEIYLSYNKYLQLTRNSFALVPSLQRLML----RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN: 550 :* * ** ** ** * ** * * * * * * * * * * * ** * * * : 5zln_B_1 496:LTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQPFSMKGIGHNFSFVAHLSMLHSLSLAHNDIHTRVSSHLNS-NSVRFLDFSGNGMGRMWDEG-: 593 SecStr : TT EEE SS TTTTTT TT EEE TT GGGG TT GGGGG TT EEE TTS SSS S EE-SS EEE SS HHHHTTST-: ExpBur :beebebbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbbbebbeebeeebeb-ebbeebbbbbbbbeebbeee-: queryA 551:PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-------------------------LFELKIIDLGLNNL-----NTLP------------------: 602 : * * *** * * * * * * ** * * *** : 5zln_B_1 594:-GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFQWTSLSFLPNLEVLDLAGNQLKALTNGTLPNGTLLQKLDVSSNSIVSV: 692 SecStr :-TTTTTTTTEETT EEE SS S HHHHHTS TT EEE TTS GGGGGG TT EEE TTS B SS TT EEE TTS B: ExpBur :-eebbebbeebeebeebbbbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebebbbbbebebebbeeeebbeebebeebbbbebebeeb: queryA 603:-ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696 : * * ** ** * * *** *** ** * ** * * * ** * * * * * * * * *: 5zln_B_1 693:VPAFFALAVELKEVNLSHNILKTVDRSWFGPIVMNLTVLDVRSNPLHCACG--AAFVDLLLEVQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 785 SecStr : TTTTTT TT EEE SS S GGGTGGGGGG SEEE SS EE TT-- THHHHHHHTGGGSTTHHHH BEEESGGGBTSBTTSS SS : ExpBur :eeebbeebeebeebebbebebeebeeebbeebbeebeebbbeebebebeee--bebbebbbebeeebebbbeebebeeeeebeeebbbeeebeee: |