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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [735 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | H 1 (H) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 400T(Q) 468Y 472T 490V 510I(V) 512D(N) 533E 535L(V) 566I(R) (identity: 44.4 %/31.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6v9u_B_1 identity=31.2% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119 : * ** * ** * * * * * ** * * * * * * * * : 6v9u_B_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120 SecStr :EEE SS SS S S TT EEE S EE TTTTTT TT EEE SS ------------- EE TTSSTT SS EEE SS SS S---: ExpBur :ebebeebebeebbeebeeebebbebbebebeebeeeebeebeebebbbbbebee-------------ebebeeebbeebeebbbbebbebebeebbe---: queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-------SSTKLGTQVQLEN---------------------LQELLLSNNKIQALKSEEL: 191 : **** * * * * ** * * * * * * * * *** * * : 6v9u_B_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEEDF: 220 SecStr :S TT SEEE SS EE TTTTTT S SEEE SSSS -- S EE TTTTTS TT EEE SS SS SS TT EEE TT EE TTTT: ExpBur :ebbeebebbbbbebebeebeeebbbebeebeebebbbbbbee--eeebeebebbbeebeebebbbbbbbbbeebbeebbeebbebebbbbebbebebebb: queryA 192:DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVV: 289 : * * * ** * * ** * * * * * * ** * * * *** * * : 6v9u_B_1 221:KGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIA: 306 SecStr :SS TT SE--EE TTS-----S S SS ----- TTS EE TTTTTT TT EEE SS S GGGGTT S--S EEE SS HHHHH: ExpBur :eebeebeb--bbbbbb-----bbbeeeeebeeee-----eeeeeebebebebbeebeebeebbbbbbbbeebeeebbeebe--ebbbbbbbbbebbebbe: queryA 290:GNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK: 382 : ** ** * * * ** * * * * * * * *** * * * * * * * ** : 6v9u_B_1 307:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLE: 399 SecStr :S GGGGG SS EEE S TT SS GGGGG TT EEE -TT SEE------ TGGGTTTTT SS EEE SS SEE GGGGGGSSS : ExpBur :ebebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebbbbbbbebebeebebebbeebeebe: queryA 383:YLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI: 443 : * ** * * * * * * * * * * * * : 6v9u_B_1 400:IIYLSENRISPLVXXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANSN: 495 SecStr :EEE SS -------------------------- SSS SSS S SS HHHHTSSEE----EE SSS SS TTTTTT EEEEE TTS : ExpBur :bbbbbebebebee--------------------------eeeeeeebbeeeeebeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebeb: Contact : b queryA 444:GQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLE: 530 : * * * * *** ** * * * * * * * ** * ** *** * ** : 6v9u_B_1 496:AQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKS: 587 SecStr : B S TTSSSTT --------SEEE SS B STTTTTT TT EEE TT HHHHHSSSS TTGGG SS EEE TT SS S EESS: ExpBur :ebebeeebbeebeeb--------bbbbbbebebbbbeeebbbbbeebebbbbbebeebbeeeeeebbbebbeebeebbebebbebebeebbeeeebebeb: Contact : b b b b b b b queryA 531:KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID----------------------------------: 592 : * * * ** * *** * * * * ** * * * ** * * : 6v9u_B_1 588:LVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSL: 685 SecStr : EEE- TTS HHHHT-T TT STTTTTEETT EEE TTS S HHHHHTS TT SEEE SS GGGGGG SS EEE TT S G: ExpBur :beebb-bbbbebeebb-ebeeeebeebbebbeebeebbbbebebeebeeebbeebbebbbebbbbebebbebebebbeebeebebbbbeebebeebbeeb: Contact : b b b queryA 593:-----------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNT: 679 : * * ** *** * * ** * * * *** *** * * * * ** * * : 6v9u_B_1 686:SDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICAS: 783 SecStr :GGT SS EEE TTS TTSTTT SS EEE TTS TTT ----- EEE TT EE SST-THHHHHHHHH SSB S GGG- BEEE: ExpBur :eeebeebbebbbbebebeebbeebbeebeebebbbbbebebeebeeebb-----eebeebbbbebebbbeee-beebeebbeebeebebeebbb-bebee: queryA 680:PPHYHG: 685 :* *: 6v9u_B_1 784:PGDQRG: 789 SecStr :STTTTT: ExpBur :eeebbe: |