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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [601 aa] | CD180 antigen :CD180_HUMAN | |
2 | b | G 1 (G) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 416K(R) 417N(G) 439G(S) 440L(H) 462Y(N) 464S 465Y(H) 484R(L) 486M(D) (identity: 11.1 %/29.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3b2d_B_1 identity=29.4% |
queryA 31:SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL: 130 : * * * ** ** * * * * * ** ** * * * * * * * * * *: 3b2d_B_1 10:ANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFL: 109 SecStr :TTTEEE TT SS TTS TT EEE TTS SEE TTTSTT TT EEE TTS EE TTTTTT TT EEE TT EE TTTT TT EEE : ExpBur :eeebbbbeeeebeebbeebeeebeebbbbebebeebeeeebeebeebbebbbbebebeebeeebbeebeebebbbbebbebeebbeebbeebeebeebeb: queryA 131:MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN: 230 : * * ** * * * ** * ** * ** * * * * * * * : 3b2d_B_1 110:IQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDS-----------: 198 SecStr :TTS GGGS TT TT EEE TTSS TT TT EEE TTS EE HHHHHTTTT SSEEEE TT EE TTTTTT-----------: ExpBur :eebebeebeebbbebbeebebbebbebebeebebbeebbbeebeebbbeebebeebbeebbebbeebeebebbbbebebebbeebbbee-----------: queryA 231:VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--FNVRYLN: 328 : * * * * * * * ** * * * ** * **: 3b2d_B_1 199:-----------------------------------TIFQSLNFGGTPNLSVIFNGLQNSTTQSL-WLGTFEDI-----DDEDISSAMLKGLCEMSVESLN: 257 SecStr :----------------------------------- EEEEEE TT S HHHHHHHTTT EEEEE-E TTS----- B GGGGGGGGGSEEEEEE: ExpBur :-----------------------------------bebeebbbbbbeebebbbebbeebebeeb-ebbbeeee-----ebeebeeebbebbeebebebbb: queryA 329:LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SD: 425 :* * ** * * * * * ** ** * ** * * * * ** * * * * : 3b2d_B_1 258:LQEH---------RFSDISSTTFQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKLVLSVNHFDQLCQISAANFPSLTH--LYI----RGNVKKLHLGVG: 341 SecStr : TT --------- BSS TTTTTT TT SEEE TT S SS -TT TT EEE TT SBGGGG GGG TT SE--EE ---- S SS B SS: ExpBur :beeb---------ebeeeeeebbebbeebeebebbbbebeebeeeb-ebbeebeebbbbebebeebeebebebbeebbb--beb----eebeeebebeeb: Contact : bb queryA 426:AFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD: 524 : ** * *** * * * ** * * * * * * * * * **** * * * * * : 3b2d_B_1 342:CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL-HINAPQSPFQNLHFLQVLNLTYCFLDTSNQH: 440 SecStr :TTTT TT EEE TTS EEEESTTTSTT TT EEE S S EEE TTTTTT TT EEE TT E-EE TT TTTT TT EEE TT TT TT: ExpBur :bbeebeebebbbbbebebebeebbbebbeebeebeebbbbebeebbbeeebbeebeebeebebbebeb-ebeeeebbbeebeebebbebbebebebebee: Contact : bb b bb b b queryA 525:MLEGLEKLEILDLQHNNLARLWKHANPGGPIY---FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS--LNLQK: 619 : * ** * * * * * * * * * * * * * * * ** * * ** *** : 3b2d_B_1 441:LLAGLPVLRHLNLKGNHFQD--------GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDL---SHNSLTCDSIDSLSHLKGIYLNLAA: 529 SecStr :TTTT TT EEE TT GG--------GEE SS GGGG TT EEE TTS SEE TTTTTT TT EEE --- SS GGGGGGGTT S EEE S: ExpBur :bbbebeebeebbbebbebee--------bbbeeebbbeebeebebbbbbebebeebeeebbeebeebeebbb---bebebebebbbbbeebeebbbbbbe: queryA 620:NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS-SC: 696 :* * * ** **** * * * * * * * ** * * * * **: 3b2d_B_1 530:NSINIISPRLL-PILSQQSTINLSHNPLDCTCSNI-HFLTWYKENLHKL-EGSEETTCANPPSLRG--VKLSDVKLSC: 602 SecStr :S GGGH-HHHHTSSEEE TT EE SGGGH-HHHHHHHHTTTSE-ESGGG BEEESGGGTT-- BTTT : ExpBur :bebeebeeebb-ebbeebeebbbbebebbbeeebe-ebbebbeebeebb-eeeeebebeeeeeeee--eebeebeeee: |