[pdbjlvh2]Protein Model on 7wm4_B_1_F

Protein Model on 7wm4_B_1_F_1 (TEMPLATE: 7wm4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	B 1 (D)	polymer(polypeptide(L)) [668 aa]	Toll-like receptor 3 :TLR3_MOUSE
2	b		F 1 (B)	polymer(polyribonucleotide)	RNA (81-MER)	39H 41K 60H 61N 62Q 84F 85N 86T(S) 108H 110E 517N 519A 544R 619K (identity: 92.9 %/78.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7wm4_B_1 identity=78.4%

queryA        27:KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT: 126
                : ***   **********  ***** ****************  ********  ** *** ********** ** ************* ** ** ******:
7wm4_B_1       3:QCTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLT: 102
SecStr          :    TTTEEE  S    S    S    SEEE TTS  S   SSTTSS    SEEE  S       THHHHH SS  EEE  S       SGGGSS  S  :    
ExpBur          :ebeeeeeebebeeeeeeebeeeeeeebeebbbbebebeebbeeebeebeebeebebbebebeebeeebbeebeebeebbbeebebeeeebebbeebeebb:    
Contact         :            b b                  bbb                     bbb                     b b                

queryA       127:ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL: 226
                :** ****** *** ***  ***** *************** ***********  *** ** ****    **** ** ****  ********  ** ** *:
7wm4_B_1     103:ELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFAL: 202
SecStr          :EEEBSS       S TTSS SS  EEEB SS  S     SS   SS  EEE  SS   EE TTTTTT SS EESEEE TT    EE TTTTTS SEE EE:    
ExpBur          :ebbbeebebeeeeebbbeebeebeebbbbebbbeebebbeeebbeebeebebbebebebbeeebbebbeebebeebbbbebebeebeeebbeebeebebb:    

queryA       227:FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY: 326
                : *** ** * ****** ** **** **** * **  **  ** ******** ********  *** **  ** * *  ******* *   *  ** * **:
7wm4_B_1     203:LLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRY: 302
SecStr          :E TTS   HHHHHHHHHHTTTS   EEE  SS   EE TTTTGGGGGS  SEEE TTS   EE TTTTTT SS  EEE  S    EE TTTTTT SS  E:    
ExpBur          :bbeebebeeebbeebbebbbebebeebbbbebebeebeeebbbbbeebebeebbbbebebeebeebbbeebeebeebbbeebebeebbeebbebbeebee:    

queryA       327:LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA: 426
                :* *** ***** **** * ********** ** *** ** **  *** ****  *******  **** ***************  ****** ****    :
7wm4_B_1     303:LSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGT: 402
SecStr          :EE TT S    SSS    EE TTSSTT SS  EEE  S  B    TTSSTT SS  EEE TT BSS SEE TTSGGGGSS    EEE TTS   EE TTT:    
ExpBur          :bbbeebbbeeeeeeeeebebeeebbebbeebeebbbbebbbeebeeebbeebeebeebbbbebbeebeebeeebbebbeebebeebebbebebeebeebb:    

queryA       427:FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML: 526
                :***** *  ******** * * ******* ***************   ********************** ***** ******************* * *:
7wm4_B_1     403:FSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL: 502
SecStr          :TTT TT  EEE  SS  EEE  SGGGTT SS  EEE  S SEEE  TTSSSS     EEE TT        SS TTTT     EEE  SS      TTTT:    
ExpBur          :beebbebeebebbebebebebebebbeebeebebbebbebeebbbbeebbeebeebeebbbeebebeebeeeebbbeebeebbbbbbbebebeebeeebb:    
Contact         :                                                                                          b b       

queryA       527:EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE: 626
                :**** ***** *********   *****  ***************** ***** *** ***** * ******* *    *  * ** *************:
7wm4_B_1     503:EGLENLEILDFQHNNLARLWXXXNPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVE: 602
SecStr          : S TT  EEE  S   STT ---  SS    S S TT  EEE TTS   B  SSSSTT TT  EEE  SS   B  TTS SS TT  EEE TTS      :    
ExpBur          :eebeebeebbbbebebeebb---eeeeeeebbeebeebeebbbeebebeebbeebbeebeebbbbbbbebebeebeeebbeebeebeebbbbebebeebe:    
Contact         :                 b                                                                          b       

queryA       627:KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                :* **** * **  *************** ******* ***** *** ******* ** ***  ********:
7wm4_B_1     603:KDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCK: 673
SecStr          :HHHHTGGGSS  EEE  S  EE STTTSHHHHHHHHT   B TTTTTS  EEESSTTTT  SSS   TT  :    
ExpBur          :eebbbebbeebeebbbbebebebeeebbbebbebbeeeebebeebeeebebeeeeeeeeeebeebebeeee:

Protein Model on 7wm4_B_1_F_1 (TEMPLATE: 7wm4 )

Input Residue Numbers for Focused Sites