Protein Model on 4r09_A_1_Q_1
(TEMPLATE: 
4r09
)Protein Model on 4r09_A_1_Q_1
(TEMPLATE: 4r09
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [749 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | Q 1 (A) | non-polymer(06S) | O-[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-2-({[(S)-({(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-[(thiophosphonooxy)methyl]tetrahydrofuran-3-yl}oxy)(sulfanyl)phosphoryl]oxy}methyl)-4-hydroxytetrahydrofuran-3-yl] dihydrogen (S)-phosphorothioate | 252N(Y) 277T(K) 278M(V) 301E 302Y(I) 304F(D) 328N(H) 331R 361N 409L (identity: 40.0 %/31.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4r09_A_1 identity=31.4% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
: * ** * ** * * * * * ** * * * * * * * * :
4r09_A_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr :EEE SS SS S TT SEEE TTS EE TTTTSS TT EEE S S ------------ EE TTTTTT SS EEE SS SS S---:
ExpBur :ebebeebebeebbeebbeebeebebbebebeebeeebbeebeebeebbbbebeee------------ebebeeebbeebeebeebbbbbbebeebbe---:
queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
: **** * * * * ** * * * * * * * *** * * :
4r09_A_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr :S TT SEEE SS EE HHHHTT TT SEEE SSS TT- EE TTTTTT TT EEE SS SS S TT SEEE TTS EE TTT:
ExpBur :ebbebbbbbbbbbbebbebeeebbbebeebebbebbbbbbee-eeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee:
queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
: * * * ** * * ** * * * * * * ** * * * *** * * :
4r09_A_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr :TTT TT E--EE TTS-----S TT SS ----- STT EE TTTTTT TT EEE TTS S GGGGTT T--T EEE SS HHHH:
ExpBur :beebeebeb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebe--ebeebbbbebebbebb:
Contact : b bb
queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
: ** ** * * * ** * * * * * * * *** * * * * * * * **:
4r09_A_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr :HS GGGGG TT EEE S SS SB GGGGG TT EEE -TT SEE------ GGGGGGGTT TT EEE SS EE GGGGGG SS :
ExpBur :eebebbeebeebbebbbbbbbeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb:
Contact : bb b b b b
queryA 382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446
: ** * * ** ** * * * * * * * * * * * :
4r09_A_1 399:EIIYLSENRISPLXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498
SecStr : EEE SS ------------------------ SS TTS SSS S SS HHHHTTS EEE SS S TTTTTT SEEE SS :
ExpBur :ebbbbbebebebe------------------------eeeeebeeeebeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe:
Contact : b bbbb b
queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533
:* * * *** ** * * * * * * * ** * ** *** * ** *:
4r09_A_1 499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590
SecStr : S TTTTSTT --------SEEE S TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TTS SS EESS E:
ExpBur :beeebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebebbee:
queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592
: * * ** * *** * * * * ** * * * ** * * :
4r09_A_1 591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688
SecStr :EE- SS HHHHT- TT TTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT:
ExpBur :bb-bbbbbbeebb-eeebeebbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebeeb:
queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682
: * * ** *** * * ** * * * *** *** * * * * ** * * * :
4r09_A_1 689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786
SecStr : S EEE SS TTTTSS TT EEE SS GGGT SS EEE TT EE SGG-GHHHHHHHHT TTSB GGG-SBEEESTT:
ExpBur :bebbebbbbbebebeebbebbbbebebbeebbbbebebebbeeebbeeeeebebeebbbeebebebeee-bbebbebbeeeeebebeebbe-bebeeeee:
queryA 683:YHG: 685
: *:
4r09_A_1 787:QRG: 789
SecStr :TTT:
ExpBur :bee:
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[assembly_id:1]
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