Protein Model on 6kya_A_1_N_1
(TEMPLATE: 
6kya
)Protein Model on 6kya_A_1_N_1
(TEMPLATE: 6kya
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [743 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | N 1 (B) | non-polymer(DY3) | 3-[5-methylsulfanyl-4-(3,4,5-trimethylphenyl)-1,2,4-triazol-3-yl]propan-1-ol | 420S(F) 421K(F) 442E(S) 444G(A) 445Q 446E(V) (identity: 16.7 %/31.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6kya_A_1 identity=31.1% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
: * ** * ** * * * * * ** * * * * * * * * :
6kya_A_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr :EEE TTS SS S TTEEEEE SS EE TTTTTT TT EEE TT S ----------- EE TTTTTT TT EEE SS SS S---:
ExpBur :bbebeebebeebbeebeeebeebebbebebeebeeebbeebeebeebbbbebeee-----------eebebeebbbeebeebeebbbbebebeebbb---:
queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
: **** * * * * ** * * * * * * * *** * * :
6kya_A_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr :S TT SEEE SS EE TTTSTT TT SEEE TTTT SS-SS SS EE TTTTTT TT EEE SS SS S TT SEEE SS EE TTT:
ExpBur :ebbebbeebbbbbbbbbebeeebbbebeebeebbbbbbbeee-eebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbebebeebbeeb:
queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
: * * * ** * * ** * * * * * * ** * * * *** * * :
6kya_A_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr :STT TT E--EE TTS-----S TT SS ----- STT EE TTTTTT TT EEE SS S GGGGTT T--T EEE SS HHHH:
ExpBur :beebeebbb--bbbbbb-----bbbeeeeeeeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebe--ebebbbbbebebbebb:
queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
: ** ** * * * ** * * * * * * * *** * * * * * * * **:
6kya_A_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr :HS GGGGG TT EEE S TT SB GGGGG TT EEE -TT SEE------ GGGGGGGGG TT EEE S SEE GGGGGG SS :
ExpBur :eebebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:
queryA 382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
: * ** * * * * * * * * * * * * :
6kya_A_1 399:EIIYLSENRISPLVXXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr : EEE SS -------------------------- TTS SSS S SS HHHHTTS E----EE TTS SS TTSSTT SEEE SS :
ExpBur :ebbbbbebebebee--------------------------eeeeeeebbeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebe:
Contact : bb b
queryA 443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
: * * * * *** ** * * * * * * * ** * ** *** * ** :
6kya_A_1 495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr : B S TTTTSTT -------- EEE S B STTTTTT TT EEE TT TT S B GGGGG SS EEE TT BSS EES:
ExpBur :bebebebebbeebeeb--------ebbbbbebebebeeeebbbbbeebbbbbbbebeeeeeeeeeebbbebbeebeebeebebbebebebbeeeeebebe:
Contact : bbb b
queryA 530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
: * * * ** * *** * * * * ** * * * ** * * :
6kya_A_1 587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr :S EEE- SS HHHHH-T TT TTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S :
ExpBur :bbeebb-bbbbbbbebb-ebeeeebbebbebbeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebeebbbeebebeebbeb:
queryA 593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
: * * ** *** * * ** * * * *** *** * * * * ** * * :
6kya_A_1 685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSXXXXXXXTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr :GGGT SS EEE SS TT S S EEE SS ------- EEE TT EE SGG-GHHHHHHHHT TTSB TTGGG- BEE:
ExpBur :bbebbebbebbbbbebebeebbeebeeeebebeebbbbebebeebeee-------eebeebbbbebebebeee-beebeeebeeeeebebbebbe-bebe:
queryA 679:TPPHYHG: 685
: * *:
6kya_A_1 783:SPGDQRG: 789
SecStr :ESTTTTT:
ExpBur :eeeebee:
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[assembly_id:1]
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