[pdbjlvh2]Protein Model on 3w3g_A_1_M

Protein Model on 3w3g_A_1_M_1 (TEMPLATE: 3w3g )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [752 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		M 1 (A)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	579V(N) (identity: 0.0 %/31.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3w3g_A_1 identity=31.1%

queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
3w3g_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE  SS  SS  S   TT  EEE  SS   EE TTTTTT TT  EEE  S S  -----------   EE TTTTTT TT  EEE  SS  SS  S---:    
ExpBur          :bbebeebebeebbeebbeebbbbebbebebeebeeebbeebeebeebbbbebeee-----------eebebeebbbeebeebeebbbbebebeebbe---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
3w3g_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT SEEE  SS   EE HHHHTT TT  EEE  SSSSS -SS SS EE TTTTTT TT  EEE  SS  SS  S   TT  EEE TTS   EE TTT:    
ExpBur          :ebbebbeebbbbebebeebeeebbbebeebeebebbbbbbee-eebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeeb:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
3w3g_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :TTT TT  E--EE TTS-----S   SS SS    ----- GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT T--T  EEE  SS  HHHH:    
ExpBur          :beebeebbb--bbbbbb-----bbbeeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebe--ebebbbbbbbbbbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
3w3g_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HH GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE -TT   SEE------ TTTTGGGTT TT  EEE  SS   EE GGGGGS SS :    
ExpBur          :eebebbeebeebeebbbbbbeeeeeeeeebebbebbbebeebebbbb-bbbbbbeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:    

queryA       382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
                :    *                                       **     * *               * *  * *  *    *  *     * *  * :
3w3g_A_1     399:EIIYLSENRISPLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr          : EEE  SS       -------------------------  TT   SS  S SS HHHHTTS E----EE TTSS  S  TTTTTT    SEEE  SS :    
ExpBur          :eebbbbebebebeee-------------------------eebeeeebeeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbbbe:    

queryA       443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
                :  * * * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **  :
3w3g_A_1     495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr          :   B  S TTTTSTT -------- EEE  SS  B  STTTTTT TT  EEE TT   S   TTTSS  GGGGG SS  EEE TT        SS   BS:    
ExpBur          :bebebebebbeebeeb--------ebbbbbebebbbbeeebbebbeebebbbbbebebeeeeeeebbbbebbeebeebeebbbbebebeebeeeeebebe:    

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
                :   *      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                 :
3w3g_A_1     587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr          :S  EEE-  SS HHHHH-T TT TTTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S :    
ExpBur          :bbeebb-bbbbbbbebb-ebeeeebbbebebbeebeebbbbebebeebbeebbeebbebbbebbbbebebeebebebbeebeebebbbbeebebeebbee:    
Contact         :                                                 b                     b b bb                       

queryA       593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
                :            *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     * :
3w3g_A_1     685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr          :GGGT SS  EEE  SS      SS S S TT  EEE  SS  S   BTTB   S     EEE TT  EE SGG-GHHHHHHHHH  SSB TTGGG- BEE:    
ExpBur          :beebbebbebbbbbebebeebbeebbbebeebeebbbbebebebbeeebbbeeeebebeebbbbebebebeee-bbebeebbeebeebebbebbe-bebe:    

queryA       679:TPPHYHG: 685
                : *    *:
3w3g_A_1     783:SPGDQRG: 789
SecStr          :ESTTTTT:    
ExpBur          :eeeebee:

Protein Model on 3w3g_A_1_M_1 (TEMPLATE: 3w3g )

Input Residue Numbers for Focused Sites