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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [748 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | E 2 (A) | non-polymer(M0A) | 1-[[3-(aminomethyl)phenyl]methyl]-2-butyl-imidazo[4,5-c]quinolin-4-amine | 475S(D) 477A(D) 494N(G) 495V 496D(T) (identity: 20.0 %/31.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5awb_A_1 identity=31.4% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119 : * ** * ** * * * * * ** * * * * * * * * : 5awb_A_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120 SecStr :EEE SS SS S TT SEEE SS EE TTTSTT TT EEE S S ------------ EE TTTTTT TT EEE SS SS S---: ExpBur :bbebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeeebbeebeebeebbbbebebeebbe---: queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190 : **** * * * * ** * * * * * * * *** * * : 5awb_A_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219 SecStr :S TT SEEE SS EE HHHHTT TT EEE SSS TT- EE TTTTTT TT EEE SS SS SS TT SEEE TTS EE SST: ExpBur :ebbebbbebbbbbbebbebeeebbbebeebebbebbbbbeee-eeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee: queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288 : * * * ** * * ** * * * * * * ** * * * *** * * : 5awb_A_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305 SecStr :TTT TT E--EE TTS-----S TT SS ----- GGG EE TTTTTT TT EEE TTS S GGGGTT T--T EEE TTS HHHH: ExpBur :beebeebbb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebe--ebebbbbbebebbebb: queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381 : ** ** * * * ** * * * * * * * *** * * * * * * * **: 5awb_A_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398 SecStr :HS GGGGG TT EEE S TT SS GGGGG TT EEE -TT SEE------ GGGGGGGTT TT EEE SS EE GGGGTTSS : ExpBur :eebebbeebeebeebbbbebbeeeeeeeebebbeebeebeebebbbb-ebbbbeeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb: queryA 382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446 : ** * * ** ** * * * * * * * * * * * : 5awb_A_1 399:EIIYLSENRISPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498 SecStr :SEEE SS ------------------------- S TTS SSS S SS HHHHTTS EEE SS S TTTTTT SEEE SS : ExpBur :eebbbbebebeee-------------------------eeeebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe: queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533 :* * * *** ** * * * * * * * ** * ** *** * ** *: 5awb_A_1 499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590 SecStr : S TTTTSTT -------- EEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TTS SS BSS E: ExpBur :bebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbee: Contact : b b bbb queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592 : * * ** * *** * * * * ** * * * ** * * : 5awb_A_1 591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688 SecStr :EE- TTS HHHHT- TT TTTTTTTTBTT EEE TTS S HHHHHTS TT SEEE SS GGGGGG TT EEE SS S HHHH: ExpBur :bb-bbbbbbeebb-eeebeebbebbebbeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeeb: queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682 : * * ** *** * * ** * * * *** *** * * * * ** * * * : 5awb_A_1 689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786 SecStr : S EEE SS TTSSTT TT EEE TTS TTTS SS EEE TT EE SGG-GHHHHHHHHHTTTSB GGG-SBEEESTT: ExpBur :bebbebbbbbebebeebbeebbeebebbeebbbbebebeebeeebbebeeeeebeebbbbebebebeee-beebeebbeeeeebebbebbb-bebeeeee: queryA 683:YHG: 685 : *: 5awb_A_1 787:QRG: 789 SecStr :TTT: ExpBur :bee: |