[pdbjlvh2]Protein Model on 5awa_A_1_E

Protein Model on 5awa_A_1_E_2 (TEMPLATE: 5awa )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [735 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		E 2 (A)	non-polymer(M8D)	5-[[3-(aminomethyl)phenyl]methyl]-3-pentyl-quinolin-2-amine	475S(D) 477A(D) 494N(G) 495V 496D(T) (identity: 20.0 %/31.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5awa_A_1 identity=31.6%

queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
5awa_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE TTS  SS  S   TT  EEE  SS   EE GGGSTT  S  EEE  SS  -------------  EE TTSSTT SS  EEE  SS  SS  S---:    
ExpBur          :bbebeebebeebbeebeeebbebebbebebeebeeeebeebeebeebbbbbbee-------------ebebeebbbeebeebeebbbbbbebeebbb---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
5awa_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT SEEE TTS   EE HHHHTS TT SEEE  SSS TT- S    EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TTS   EE TTS:    
ExpBur          :ebbeebbbbbbbbbebbebbeebbbebeebeebebbbbbeee-eeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeeb:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
5awa_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :STT TT SE--EE TTS-----S   TT SS    ----- GGG   EE TTSSTT TT  EEE TTS      GGGGTT T--T  EEE TTS  HHHH:    
ExpBur          :beebeebbb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebe--ebebbbbbebebbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
5awa_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HS GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE -TT   SEE------ SGGGGGGTT TT  EEE  SS   EE GGGGTTSS  :    
ExpBur          :eebebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbb-bbbbbeeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb:    

queryA       382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446
                :    **    *                           *    **       **           * *  * *  *    *  *     * *  *   * :
5awa_A_1     399:EIIYLSENRISPXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498
SecStr          : EEE  SS    -------------------------  SS TTS SSS  S SS HHHHTTS EEE  SS   S  TTTTTT    SEEE  SS     :    
ExpBur          :eebbbbebebee-------------------------eeebebeeeebeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe:    

queryA       447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533
                :* * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **     *:
5awa_A_1     499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590
SecStr          :  S TTTTSTT -------- EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG TT  EEE TTS     SS     BSS  E:    
ExpBur          :bebebbeebeeb--------ebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbee:    
Contact         :                              b b                          bbb                                      

queryA       534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592
                :      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                     :
5awa_A_1     591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688
SecStr          :EE- TTS HHHHT- TT  TTTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT:    
ExpBur          :bb-bbbbbbeebb-eeebeebbebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeeb:    

queryA       593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWINE-THTNIPEL: 671
                :        *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *:
5awa_A_1     689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRL: 776
SecStr          : S   EEE  SS      TTTTTS TT  EEE  SS  S   GGG -----   SEEE TT  B  SGG-GHHHHHHHHH TTSB   G:    
ExpBur          :bebbebbbbbebebeebbebbbbebeebeebbbbebebeebeeebe-----eebeebbbbebebeeeee-bbebeebbeeeeebebbeb:

Protein Model on 5awa_A_1_E_2 (TEMPLATE: 5awa )

Input Residue Numbers for Focused Sites