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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [740 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
2 | b | E 1 (A) | non-polymer(SO4) | SULFATE ION | 42L 43T(K) 44Q(S) (identity: 33.3 %/29.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3wpf_A_1 identity=29.3% |
queryA 32:HEVADCSHLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------------LEPELCQKLPMLKVLNLQHNELSQ--: 113 :* ** * * ** *** * * * * * * * * * ** * *** * : 3wpf_A_1 19:HGLVDCNWLFLKSVPRFXXXASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWNCPPTGLSXXXXSCHMTIEPRTFLAMRTLEELNLSYNGITTVP: 118 SecStr :TTEEE TTS SS --- STT EEE TT EE TTTTGGGTT SEEE TTSB SS ---- EE TTTTTT TT EEE SB SS : ExpBur :eeebbbbebeeeebbee---eebeebeebbbbebebeebeeebbeebeebeebebeebbbbeeee----ebebeeeeebbeebeebeebebbebbbeebb: Contact : bbb queryA 114:------------------LSDKTFAFCTNLTELHLMSNSIQK------IKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK: 187 : * * * * * * * * * * * * * ** * * ** * * * * : 3wpf_A_1 119:RLPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNL--TKVPRQLP-PSLEYLLVSYNLIVKLG: 215 SecStr : TT EEE TTS EE GGGGTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS --SS SS -TT SEEE TTS EE : ExpBur :ebbeebbebbbbbbebeebeeebbeebeebebbebbbbbbeebebeeebebeeebbeebeebbebbbeebeb--eebbeebb-eebeebbbbbbebeebb: queryA 188:SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-: 286 : * * ** * * * ** * * * * * * * * * ** * **** * * : 3wpf_A_1 216:PEDLAQL--TSLRVLDVGGNCRR-----CDHAPNPCIECGQKSLHLHPETFHHL------SHLEGLVLKDSSLHTLNSSWFQGL--VQLSVLDLSENFLY: 300 SecStr :GGGSTT --TT SEEE TTSSB ----- TT SS B SSSS EE TTTTTT ------TT EEE SS HHHHTT -- S EEE SSS H: ExpBur :eebbeeb--eebeebbbbbbbbb-----beeeeeeeeebeeeebebeeebbeeb------eebebbbbbbbbbeebeebbbeeb--eebeebbbbebbbb: queryA 287:-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLK----RSFTKQSIS-LASLPKIDDFSFQW-------------LKCLEHLN: 361 : * * * * * ** * ** * * ** *** * * : 3wpf_A_1 301:ESITHTNAFQNLTRLRKLNLSFNYRKKVSFARLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVD: 400 SecStr :HHHTT STTSS TT EEE TT SSS GGGGG TT EEE TT SEE TTTTGGGTT TT EEE SS EE GGGGGS SS EEE: ExpBur :bbbeebebbeebeebeebebbebeeeeeeeeebebbebbeebeebeebbbbbbebeebbeebbeebbebeebebbbbeebebeebebbbbeebebbeebb: queryA 362:MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET------FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL: 455 : ** * * * * * * * * * * * * * * * *: 3wpf_A_1 401:LSDNRISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFMDRCKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLPL: 500 SecStr : SS S --------------------------------- S SSS EEE SS SS GGGGTT TT EEE SS B S S TT : ExpBur :bbebebebeee---------------------------------eebbebeeeebbbebbebebeebeeebbeebeebebbbbbebebebebebebbeeb: queryA 456:ENIFEIYLSYNKYLQLTRNSFALVPSLQRLML----RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP: 551 : * ** ** ** * ** * * * * * * * * * * ** * * * : 3wpf_A_1 501:TNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQPFXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSHLNS-NSVRFLDFSGNGMGRMWDEG--: 597 SecStr :TT EEE SS B TTTTTT TT EEE TT --- S BTGGGGG TT EEE TT TTB S EE-SS EEE TTS HHHHHTT --: ExpBur :eebebbbbbebebebeeeebbebbeebebbbbbebebee---eeeebbebbeebeebebbbbbebeeeeebbeebeb-ebbeebebbebebbebbeee--: queryA 552:GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-------------------------LFELKIIDLGLNNL-----NTLP-------------------: 602 :* * *** * * * * * * ** * * *** : 3wpf_A_1 598:GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVV: 697 SecStr :STTTTTTTEETT EEE TTS HHHHHTS TT EEE TTS GGGGGGSTT EEE TTS B S TT EEE TTS B : ExpBur :eebbebbeebeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebebbeeeebbeebebeebbbbebebeebe: queryA 603:ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696 : * * ** ** * * *** ** ** * ** * * * ** * * * * * * * * *: 3wpf_A_1 698:PAFFALAVELKEVNLSHNILKTVDRSWFGPIVMQLTVLDVRSNPLHCACG--AAFVDLLLEVQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789 SecStr :TTTTTT TT EEE SS S GGGTGGGGGT SEEE SS EE TT-- THHHHHHHTGGGSTTTTTTSBEEESTTTBTSBTTSS GGG : ExpBur :eebbeebeebeebebbebebeebeeebbeebbeebeebbbeebebebeee--bebbebbbebeeebeebbeebebeeeeebeeebbbeeebeee: |