CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [590 aa] | Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU | |
2 | b | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 184Q 208Q(P) 234G(N) 258S(R) (identity: 25.0 %/27.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7mlm_A_1 identity=27.9% |
queryA 37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136 :* ** **** * * * * * * * * ** * * * * * * * * * * * * : 7mlm_A_1 55:CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA: 154 SecStr : TTS SS TTS TT EEE TTS EE TTTTTT TT EEE TT EE TTTTTT TT EEE TT TTTTTT TT EEE TTS : ExpBur :beeeebeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbebeebeeebbeebeebebbbbbebebe: queryA 137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233 : * * * ** * ** * ** ** * ** * * * * * * * * * * : 7mlm_A_1 155:SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NF: 252 SecStr : STT TT TT EEE SS GGGGT TT EEE SS EE TGGGHHHHH TT EEE TT EE TTTTTT -EEEEEEEES- : ExpBur :ebeebebbebeebeebebbebebeebbbbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeeb-ebebbbbee-bb: Contact : b b queryA 234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL-: 327 : * * ** ** * * * ** * * * ** * ** : 7mlm_A_1 253:NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-------------DFSDDIVKFHCLANVSAMSLAGV-SIKYLE: 338 SecStr :SSHHHHHHHHHTTTT EEEEEEEE TTS S GGGGGGGGGSEEEEEEE S-------------S GGGGG GGGTT SEEEEES - : ExpBur :eeeeebeebbeebbebebebbbbbbeeeeeebeebebebbebbeebebeebebbbbe-------------ebeeebbebebbbebebbbbbbb-ebeebe: Contact :b b queryA 328:NLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD: 425 : * ** * * ** * * * * * * * ** ** * * * * * * * * : 7mlm_A_1 339:DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-LTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNG-AIIMSA: 430 SecStr : TT SEEEEES SS TT EEE-EES SS B ---- TT EEE SS BEEEE -- HHHH S EEE S S-EEEE S: ExpBur :ebeeebebeebbbeebebeebbebebeebeebb-bbebeeebebee----bebeebeebbbbebebebebbb--beebbbbeebebbbbbebe-ebebee: queryA 426:AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525 : * * * ** ** ** * ** * * * *** **** * : 7mlm_A_1 431:NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGV: 529 SecStr : TT TT EEE TTSEEESTTTTTTTTT TT EEE TTS EE TTTTTT TT EEE TT EEGG-GEE S SS TT EEE TTS EE TTT: ExpBur :ebebbeebeebbbeebebeebeeebbbebbeebeebbbbebebebeeebbbebbeebeebebbebbbee-ebbbebbeebeebeebbbbebebeebeebb: queryA 526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625 : * * * **** * * * * ** * * * * * ** * : 7mlm_A_1 530:FDTLHRLQLLNMSHNNL------------------------LFLDSSHYNQ--------LYSLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT------: 591 SecStr :TTT TT EEE SS ------------------------ GGGGTT-------- TT EEE SS TTTTTT TT EEE S------: ExpBur :beebeebebbebbebeb------------------------eebeebbbbe--------beebeebbbbebebebbeebbbeebeebeebebee------: queryA 626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 663 : ** ** * * * * : 7mlm_A_1 592:-------------------NPWDCSCPRIDYLSRWLNK: 610 SecStr :-------------------S B TTTTHHHHHHHHH: ExpBur :-------------------bebeeeeeebebbbebbee: |