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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [738 aa] | Toll-like receptor 9 :TLR9_BOVIN | |
2 | b | D 1 (D) | polymer(polydeoxyribonucleotide) [6 base] | DNA (5'-D(P*GP*GP*CP*GP*TP*T)-3') | 519A(H) 543A 544R(F) (identity: 33.3 %/31.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5y3m_A_1 identity=31.7% |
queryA 360:LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF: 459 :* * * *** * * * ** * ** * * * * ** * * ** *** * * * *: 5y3m_A_1 455:LDLSRNNLVTIQQEMFTRLSRLQCLRLSHNSIS-QAVNGSQFVPL--TSLRVLDLSHNKLDLYHGRSFTELPQLEALDLSYNSQPFSMQGV---GHNLSF: 548 SecStr :EE SS SS GGGGTT TT EEE TTS - SSSSTT --TT EEE SS TTTTTT TT EEE TT GGGGSTT --- GG: ExpBur :bbbbebebeebeeebbeebeebebbebbebebe-bebebebbebb--eebebbbbbebebebeeeebbbbbeebebbbbbebeebbeeeee---ebebeb: queryA 460:EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--------------FQPLRNLTILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLAR: 544 : * ** * * * * * * * * **** **** * * * * * * * **** : 5y3m_A_1 549:VAQLPSLRYLSLAHNG---IHSRVSQKLSSASLRALDFSGNSLSQMWAEGDLYLCFFKGLRNLVQLDLSENHLHTLLPRHLDNLPKSLRQLRLRDNNLAF: 645 SecStr :GGG TT EEE TTS --- SSS S EESS EEE SS HHHHHTSTTTTTTTTTEETT EEE SS S HHHHHTS TT EEE TT S : ExpBur :beebeebeebbbbebe---beeebbeebebebbebbbbbbbbbeebbeeeeebbbbbeebeebbebbbbebebeebeeebbebbbeebeebebeebebee: Contact : b bb queryA 545:L-WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR: 643 : * * * * * * * * * * * * *** * * ** * ** : 5y3m_A_1 646:FNWSS---------LTVLPRLEALDLAGNQLKALSNGSLPPGIRLQKLDVSSNSIGFVIPGFFVRATRLIELNLSANALKTVDPSWFGSLAGTLKILDVS: 736 SecStr : GGG---------GGGSTT EEE TTS EE SS TT EEE SS EE TTSSTT TT EEE SS S GGGTTTHHHH SEEE : ExpBur :bebeb---------beebeebebbbbbbbebebbbeebbbeebebeebbbbebebeebeeebbeebeebeebebbebebeebeeebbeebbeebeebbbb: queryA 644:FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG: 685 : ** * * * ** * * ** * * *: 5y3m_A_1 737:ANPLHCACG--AAFVDFLLERQEAVPGLSRRVTCGSPGQLQG: 776 SecStr :S EE TT-- THHHHHHHTGGGSTTTTTTSBEEESTTSTT: ExpBur :ebebebeee--bebeebbbeeeebbebbbeebebbbeeeeee: |