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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [752 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | D 1 (D) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 394R 397T(I) 398N(K) 401F(C) 413N(D) 415T(S) 416K(L) 437D(N) 439G(S) 468Y 470Q(D) (identity: 18.2 %/31.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3w3g_A_1 identity=31.1% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119 : * ** * ** * * * * * ** * * * * * * * * : 3w3g_A_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120 SecStr :EEE SS SS S TT EEE SS EE TTTTTT TT EEE S S ----------- EE TTTTTT TT EEE SS SS S---: ExpBur :bbebeebebeebbeebbeebbbbebbebebeebeeebbeebeebeebbbbebeee-----------eebebeebbbeebeebeebbbbebebeebbe---: queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190 : **** * * * * ** * * * * * * * *** * * : 3w3g_A_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219 SecStr :S TT SEEE SS EE HHHHTT TT EEE SSSSS -SS SS EE TTTTTT TT EEE SS SS S TT EEE TTS EE TTT: ExpBur :ebbebbeebbbbebebeebeeebbbebeebeebebbbbbbee-eebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeeb: queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288 : * * * ** * * ** * * * * * * ** * * * *** * * : 3w3g_A_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305 SecStr :TTT TT E--EE TTS-----S SS SS ----- GGG EE TTTTTT TT EEE TTS S GGGGTT T--T EEE SS HHHH: ExpBur :beebeebbb--bbbbbb-----bbbeeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebe--ebebbbbbbbbbbebb: queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381 : ** ** * * * ** * * * * * * * *** * * * * * * * **: 3w3g_A_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398 SecStr :HH GGGGG TT EEE S TT SB GGGGG TT EEE -TT SEE------ TTTTGGGTT TT EEE SS EE GGGGGS SS : ExpBur :eebebbeebeebeebbbbbbeeeeeeeeebebbebbbebeebebbbb-bbbbbbeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb: queryA 382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442 : * ** * * * * * * * * * * * * : 3w3g_A_1 399:EIIYLSENRISPLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494 SecStr : EEE SS ------------------------- TT SS S SS HHHHTTS E----EE TTSS S TTTTTT SEEE SS : ExpBur :eebbbbebebebeee-------------------------eebeeeebeeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbbbe: Contact : b b bb b b bb b b queryA 443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529 : * * * * *** ** * * * * * * * ** * ** *** * ** : 3w3g_A_1 495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586 SecStr : B S TTTTSTT -------- EEE SS B STTTTTT TT EEE TT S TTTSS GGGGG SS EEE TT SS BS: ExpBur :bebebebebbeebeeb--------ebbbbbebebbbbeeebbebbeebebbbbbebebeeeeeeebbbbebbeebeebeebbbbebebeebeeeeebebe: Contact : b b queryA 530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592 : * * * ** * *** * * * * ** * * * ** * * : 3w3g_A_1 587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684 SecStr :S EEE- SS HHHHH-T TT TTTTTTTTBTT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S : ExpBur :bbeebb-bbbbbbbebb-ebeeeebbbebebbeebeebbbbebebeebbeebbeebbebbbebbbbebebeebebebbeebeebebbbbeebebeebbee: queryA 593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678 : * * ** *** * * ** * * * *** *** * * * * ** * * : 3w3g_A_1 685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782 SecStr :GGGT SS EEE SS SS S S TT EEE SS S BTTB S EEE TT EE SGG-GHHHHHHHHH SSB TTGGG- BEE: ExpBur :beebbebbebbbbbebebeebbeebbbebeebeebbbbebebebbeeebbbeeeebebeebbbbebebebeee-bbebeebbeebeebebbebbe-bebe: queryA 679:TPPHYHG: 685 : * *: 3w3g_A_1 783:SPGDQRG: 789 SecStr :ESTTTTT: ExpBur :eeeebee: |