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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
2 | b | C 1 (C) | polymer(polydeoxyribonucleotide) [10 base] | DNA (5'-D(*AP*GP*GP*CP*GP*TP*TP*TP*TP*T)-3') | 39H(W) 41K(F) 43T(K) 60H(S) 62Q(R) 64R(H) 65R(H) 84F(W) 87I(P) 136Q(Y) 137K 156H(Y) 180N(Y) 209I(R) 220I(P) 221G(N) (identity: 6.2 %/30.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5zln_A_1 identity=30.3% |
queryA 32:HEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------------LEPELCQKLPMLKVLNLQHNELSQ--: 113 :* ** * * ** *** * * * * * * * * * ** * *** * : 5zln_A_1 15:HGLVDCNWLFLKSVPRFSAAASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWNCPPTGLSPLHFSCHMTIEPRTFLAMRTLEELNLSYNGITTVP: 114 SecStr :SSEEE TTS SS TT S TT EEE TT EE TTTTGGGTT SEEE TTSB GGGSTT EE TTTTTT TT EEE SB SS : ExpBur :eeebebeeeebeebbebeebeebeebeebbbbbbebeebeeebbeebeebeebebeebbbbeebbeeeeebebeeeeebbbebeebeebebbebbbeebb: Contact : b b b b b bb b b bbb bb queryA 114:------------------LSDKTFAFCTNLTELHLMSNSIQK------IKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK: 187 : * * * * * * * * ** * * * * ** * * ** * * * * : 5zln_A_1 115:RLPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSNLTHLSLKYNNL--TKVPRQLP-PSLEYLLVSYNLIVKLG: 211 SecStr : TT EEE TTSS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS --SS SS -TT SEEE SS EE : ExpBur :ebbeebeebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeebbbeebeebbebbbeebbb--eebbeebb-eebeebbbbbbebeebb: Contact : bb b b queryA 188:SEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL: 286 : * * ** ** * * * ** * * * * * * * * * ** * **** * *: 5zln_A_1 212:PEDL---ANLTSLRVLDVGGNCRR-----CDHAPNPCIECGQKSLHLHPETFHHL------SHLEGLVLKDSSLHTLNSSWFQGL--VNMSVLDLSENFL: 295 SecStr :GGGG---TT TT SEEE TTSS -----GGG SS SSSS EE TTTTTT ------TT EEE SS GGGGTT --TT EEE TTSS : ExpBur :eebb---eebeebeebbbbbbbbb-----eeeeeeeeeebeeeebebeeebbeeb------eebebbbbebbbbeebeebbbeeb--eebbebbbbbbbb: Contact : b bb queryA 287:--NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLK----RSFTKQSIS-LASLPKIDDFSFQW-------------LKCLEHL: 360 : * * * * * ** * ** ** * ** *** * * : 5zln_A_1 296:YESIQHTNAFQNLTRLRKLNLSFNYRKKVSFARLHLASSFKNLVSLQELNMNGIFFRSLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFV: 395 SecStr :TTHHHH TTTT TT EEE TT TT BS GGGGG TT EEE TTS BSEE TTTSGGGTT TT EEE SS EE GGGGGS SS EE: ExpBur :bebbeebebbeebeebeebebbbbbeeeeebeebebbebbeebeebeebbbbbbbbeebeeebbeebbebeebbbbbbbebebeebebbbbeebeebeeb: queryA 361:NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN------ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG: 454 : ** * * * * * * * * * * * * * * * : 5zln_A_1 396:DLSDNRISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNFMDRCKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVQGSQFLP: 495 SecStr :E SS SS -------------------------------- GGGGGTT S EEE SS SS GGGGTT TT SEEE TTS S SSTT: ExpBur :bbbebebebeee--------------------------------eebbeebeeeebbbbbbebebeebeeebbeebeebbbbbbbebebebebebebbee: queryA 455:LENIFEIYLSYNKYLQLTRNSFALVPSLQRLML----RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN: 550 :* * ** ** ** * ** * * * * * * * * * * * ** * * * : 5zln_A_1 496:LTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQPFSMKGIGHNFSFVAHLSMLHSLSLAHNDIHTRVSSHLNS-NSVRFLDFSGNGMGRMWDEG-: 593 SecStr : TT EEE SS TTTTTT TT EEE TT GGGG TT GGGGG TT EEE TTS SSS S EE-SS EEE SS HHHHTTST-: ExpBur :beebebbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbbbebbbebbeebeb-ebbeebbbbebbbeebbeee-: queryA 551:PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-------------------------LFELKIIDLGLNNL-----NTLP------------------: 602 : * * *** * * * * * * ** * * *** : 5zln_A_1 594:-GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFQWTSLSFLPNLEVLDLAGNQLKALTNGTLPNGTLLQKLDVSSNSIVSV: 692 SecStr :-TTTTTTTTEETT EEE SS S HHHHHTS TT EEE TTS GGGGGG TT EEE TTS SB SS S TT EEE SS B: ExpBur :-eebbebbeebeebeebbbbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebebbeeeebbeebebeebbbbebebeeb: queryA 603:-ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696 : * * ** ** * * *** *** ** * ** * * * ** * * * * * * * * *: 5zln_A_1 693:VPAFFALAVELKEVNLSHNILKTVDRSWFGPIVMNLTVLDVRSNPLHCACG--AAFVDLLLEVQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 785 SecStr : TTTTTT TT EEE SS S GGGTGGGGGG SEEE S EE TT-- THHHHHHHTGGGSTTHHHHSBEEESGGGBTSBTTSS SS : ExpBur :eeebbeebeebeebebbebebeebeeebbeebbeebeebbbeebebebeee--bebbebbbebeeebebbbeebebeeeeebeeebbbeeebeee: |