[pdbjlvh2]Protein Model on 3rfs_A_1_C

Protein Model on 3rfs_A_1_C_1 (TEMPLATE: 3rfs )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [263 aa]	Internalin B, repeat modules, Variable lymphocyte receptor B :D2P9A6_LISM2:Q4G1L3_EPTBU
2	b		C 1 (A)	non-polymer(MG)	MAGNESIUM ION	565H(T) (identity: 0.0 %/33.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3rfs_A_1 identity=33.0%

queryA       479:VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP: 578
                : *    * *    *       *    * *** * *  *            *  *  * *  * *  *        *      *  *  ***  *     *:
3rfs_A_1      62:LPNVRYLALGGNKLHDI----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--------PDGVFDKLTNLTYLNLAHNQLQSLP: 149
SecStr          : TT  EEE TTS     ----GGGTT TT  EEE TTS      TTTTTT TT  EEE TTS     -------- TTTTTT TT  EEE  SS      :    
ExpBur          :beebeebbbbebebeeb----ebbeebeebbebbbeebebeebeeebbeebeebeebbbbebebeeb--------beebbeebeebeebbbbebebeebb:    
Contact         :                                                                                      b             

queryA       579:VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC-: 677
                :  **  *  *   **  * *  **  **     ** * *  *   **   **      *       ** ****  *     ***  *      *      :
3rfs_A_1     150:KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSLQYIWLHDNPWDCTCPGIRYLSEWINK-HSGVVRNSAGSVAP: 247
SecStr          :TTTTTT TT  EEE  SS      TTTTTT TT  EEE  SS  S   TTTTT-T TT  EEE  SS B   TTTTHHHHHHHHH-TGGGBB TTS B G:    
ExpBur          :eebbeebeebbebbbbebebeebbeebbeebeebebbebbebebeebeeebbe-ebeebeebbbbebebebeeeebebbbebbee-eeebbeeeeeeebe:    

queryA       678:-NTPPHYHGFPVR: 689
                :        * ***:
3rfs_A_1     248:DSAKCSGSGKPVR: 260
SecStr          :GGSBBTTT  BGG:    
ExpBur          :ebbebeeeeebbe:

Protein Model on 3rfs_A_1_C_1 (TEMPLATE: 3rfs )

Input Residue Numbers for Focused Sites