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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | B 1 (B) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 175E(K) 177L(F) 179S 199L 203E(D) 205S 252N(Y) 254S(N) 280D (identity: 44.4 %/30.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5hdh_A_1 identity=30.7% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119 : * ** * ** * * * * * ** * * * * * * * * : 5hdh_A_1 20:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 116 SecStr :EEE SS SS S SS SEEE SS EE TTTS S S EEE S S ------------ EE TTTTTT SS EEE SS SS S---: ExpBur :ebebbebebeebbeeeeeebeebebbebebeebeeebbeebeebbbbebbebeee------------ebebeebbbeebeebeebbbbebebeebbe---: queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190 : **** * * * * ** * * * * * * * *** * * : 5hdh_A_1 117:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 215 SecStr :S S SEEE SS EE TTTTTT S SEEE SSS S -SS S EE TTTTTT TT EEE SS SS SS TT SEEE SS EE TTT: ExpBur :ebbebbebbbbbebbbeebeeebbbebeebeebebbebbbbe-eebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebeeeb: Contact : b b b queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288 : * * * ** * * ** * * * * * * ** * * * *** * * : 5hdh_A_1 216:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 301 SecStr :TTT TT E--EE TTS-----S S TT ----- GGG EE TTTTTT TT EEE SS S GGGGTT T--T EEE SS HHHH: ExpBur :beebeebbb--bbbbbb-----bbbbeeeeeeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebe--ebebbbbbbbbbbebb: Contact : b b b b b b queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381 : ** ** * * * ** * * * * * * * *** * * * * * * * **: 5hdh_A_1 302:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 394 SecStr :HH GGGGG TT EEE S TTB SB GGGGG TT EEE -TT SEE------ GGGGGGGTT TT EEE S EE GGGGGG SS : ExpBur :eebebbeebeebbebbbbbbbeeeebeeebebbeebbebeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbbbebeebebebbeebeeb: queryA 382:KYLSLS-NSFTSLRTLTNETFVSLAHSPLHI----------------------------------LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446 : ** * * ** * * * * * * * * * * * : 5hdh_A_1 395:EIIYLSENRISPLVXXXXXXXXNSSSFQRHIXXXXXXXXXXXPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 494 SecStr : EEE S -------- B ----------- SSS S SS HHHHTTS EEE SS SS TTTTTT SEEE SS : ExpBur :ebbbbbebebebee--------eeeeebeee-----------eeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbbbebebe: Contact : bbbb queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533 :* * * *** ** * * * * * * * ** * ** *** * ** *: 5hdh_A_1 495:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 586 SecStr : S TTTTSTT --------SEEE SS TTTTTT TT EEE S HHHHSTT GGGGG SS EEE TTS SS EESS E: ExpBur :bebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebbbeebbeeeebebebbee: queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592 : * * ** * *** * * * * ** * * * ** * * : 5hdh_A_1 587:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 684 SecStr :EE- TTS HHHHH-HSSSSTTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT: ExpBur :bb-bbbbbbbebb-eeeeeebbebbeebeebeebebbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbebbebeebbeebeeb: queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682 : * * ** *** * * ** * * * *** *** * * * * ** * * * : 5hdh_A_1 685:TSSLRTLLLSHNRISHLPSGFLXXXSSLKHLDLSSNLLKTINKSALXXXXXXKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 782 SecStr : SS EEE SS S --- EEE SS S ------ SEEE TT EE STT-HHHHHHHHHH TTSB S TTT- BEEESTT: ExpBur :bebbebbbbbebebeebbebbe---eebeebbbbebebebbeeeee------eeeebbbbebebebeee-beebeebbeeeeebebeeebe-bebeeeee: queryA 683:YHGFPVRLFDTSSC: 696 : * *: 5hdh_A_1 783:QRGKSIVSLELTTC: 796 SecStr :TTT BTTT GGGG: ExpBur :beeebbbebeeeee: |