[pdbjlvh2]Protein Model on 4v2c_A_1_B

Protein Model on 4v2c_A_1_B_1 (TEMPLATE: 4v2c )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [323 aa]	FIBRONECTIN LEUCINE RICH TRANSMEMBRANE PROTEIN 2 :Q8BLU0_MOUSE
2	b		B 1 (B)	polymer(polypeptide(L)) [106 aa]	PROTEIN UNC5D :F1LW30_RAT	110E(N) 112S(Q) 133N 134S 136Q(S) 156H(K) 157N 158G(H) 180N(E) 181N 182K(R) 208Q(L) 230N(S) (identity: 30.8 %/31.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4v2c_A_1 identity=31.6%

queryA        28:CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNLT: 126
                :*        *    ** **   *   *** *  **     *          *          *  *    **    ** ** *     *    *    * :
4v2c_A_1       6:CRCDRNFVYCNERSLTSVPLGIPEGVTVLYLHNNQINN--AGFPAELHNVQSVHTVYLYGNQLD-EFPMNLPKNVRVLHLQENNIQTISRAALAQLLKLE: 102
SecStr          :SEEETTEEE TTS  SS  S   SS SEEE  SS   T--T   GGGTT  S  EEE  S    -B  SS  TT  EEE TTS   BB HHHHHH TT  :    
ExpBur          :beeeeeebebeeeebeebbeebeeebebbebbebebee--ebbeeebeebeebebbebeebebe-ebbeebbebbeebbbbebebeebbeebbebbeebe:    
Contact         :                                                                                   b b              

queryA       127:ELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQI--KEFSPGCFHAIG: 221
                :****  ***         *     *  * ** * ***   *  *    ****    * *          * *  **  *    *    *    * *    :
4v2c_A_1     103:ELHLDDNSISTVGVEDGAFREAISLKLLFLSKNHLSSVPVGLPV---DLQELRVDENRIAVISDMA---FQNLTSLERLIVDGNLLTNKGIAEGTFSHLT: 196
SecStr          :EEE  SS   TTTB TTTGGG TT  EEE  S   SB  S   T---T  EEE  SS   BB TTT---TSS  S  EEE  SS   TTTB TTSSTT T:    
ExpBur          :ebbbeebebeeebbeebbbeebeebeebbbbebebeebbebbbe---ebebbebbebebeebeeeb---beebeebeebbbbbbebebebbeeebbeebe:    
Contact         :      bb b b                   bbb                     bbb                          b               

queryA       222:RL--FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE: 301
                : *  *    *     *         *  *    * *   *      * *  *    *  ** * * *       *  *  * :
4v2c_A_1     197:KLKEFSIVRNSLSHPPP-------DLPGTHLIRLYLQDNQINHIPLTAFANLR--KLERLDISNNQLRMLTQGVFDHLSNLK: 269
SecStr          :T  EEE TTS  SS  S-------S   SS  EEE TTS      TTTSTT T--T  EEE  SS      TTSSSS  S  :    
ExpBur          :ebebbbbbebebebbbe-------ebbbeebbebbbeebebeebeeebbbebe--ebeebbbbebebeebeeebbeebeebe:    
Contact         :          b

Protein Model on 4v2c_A_1_B_1 (TEMPLATE: 4v2c )

Input Residue Numbers for Focused Sites