Protein Model on 3wpi_A_1_B_1
(TEMPLATE: 
3wpi
)Protein Model on 3wpi_A_1_B_1
(TEMPLATE: 3wpi
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [727 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
| 2 | b | B 1 (B) | polymer(polydeoxyribonucleotide) [9 base] | DNA (5'-D(*CP*CP*TP*CP*AP*AP*TP*AP*GP*GP*GP*TP*GP*AP*GP*GP*GP*G)-3') | 83G(K) 108H(Y) 129H(F) 131M(D) 135I(Y) 136Q(Y) 137K 153D(S) 155S(K) 156H(Y) 177L 180N(Y) 201K(V) 203E(D) 209I(R) 220I(P) 221G(N) 252N(G) 256S(K) 278M(V) 283Y(E) 302Y(K) (identity: 9.1 %/29.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpi_A_1 identity=29.1% |
queryA 32:HEVADCSHLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------------LEPELCQKLPMLKVLNLQHNELSQ--: 113
:* ** * * ** *** * * * * * * * * * ** * *** * :
3wpi_A_1 19:HGLVDCNWLFLKSVPRFXXXXSCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWNCPPTGLSXXXXSCHMTIEPRTFLAMRTLEELNLSYNGITTVP: 118
SecStr :TTEEE TTS SS ---- TT EEE TT EE TTTTGGGTT SEEE TTSB SSS ---- EE TTTTTT TT EEE SB SS :
ExpBur :eebbebbebebeebbee----ebeebeebbbbebebeebeeebbeebeebeebbbeebbbbeeee----ebebeeeeebbeebeebeebebbebbbeebb:
Contact : b b
queryA 114:------------------LSDKTFAFCTNLTELHLMSNSIQK------IKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK: 187
: * * * * * * * * * * * * * ** * * ** * * * * :
3wpi_A_1 119:RLPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNL--TKVPRQLP-PSLEYLLVSYNLIVKLG: 215
SecStr : TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS --SS SS -TT SEEE SS EE :
ExpBur :ebbeebbebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeebbbeebeebbebbbeebeb--eebbeebb-eebeebebbbbebeebb:
Contact : bb b b bbb b bb b b
queryA 188:SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-: 286
: * * ** * * * ** * * * * * * * * * ** * **** * * :
3wpi_A_1 216:PEDLAQL--TSLRVLDVGGNCRR-----CDHAPNPCIECGQKSLHLHPETFHHL------SHLEGLVLKDSSLHTLNSSWFQGL--VQLSVLDLSENFLY: 300
SecStr :GGGGTT --TT SEEE TTSSB ----- TT SS B SSSS EE TTTTTT ------TT EEE SS S GGGGTT --TT EEE TTSS T:
ExpBur :eebbeeb--eebeebbbbbbbee-----beeeeeeeeebebebbebeeebbeeb------eebebbbbbbbbbeebeeebbebb--eebbebbbbebebb:
Contact : b b b bb b b b b
queryA 287:-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLK----RSFTKQSIS-LASLPKIDDFSFQW-------------LKCLEHLN: 361
: * * * * * ** * ** * * ** *** * * :
3wpi_A_1 301:ESITHTNAFQNLTRLRKLNLSFNYRXXXXXXRLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVD: 400
SecStr :TGGGT GGGG TT EEE TT ------ GGGGG TT EEE TT SEE TTTTGGGTT TT EEE S EE GGGGGSSSS EEE:
ExpBur :ebbbebebbeebeebeebebbebee------ebebbebbeebeebeebbbbbbebeebbeebbeebbebeebebbbbeebebeebebbbbeebeebeebb:
Contact : b
queryA 362:MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF------VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL: 455
: ** * * * * * * * * * * * * * * *:
3wpi_A_1 401:LSDNRISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRCKXXKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLPL: 500
SecStr : SS SS ----------------------------------- -- EEE SS SS GGGGTT TT EEE TTS B S S TT :
ExpBur :bbebebebeee-----------------------------------ebebe--ebbbebbebebeebeeebbeebeebebbbbbebebebebebebbebb:
queryA 456:ENIFEIYLSYNKYLQLTRNSFALVPSLQRLML----RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP: 551
: * ** ** ** * ** * * * * * * * * * * ** * * * :
3wpi_A_1 501:TNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQXXXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSHLNS-NSVRFLDFSGNGMGRMWDEG--: 597
SecStr :TT EEE SS B TTTTTT TT EEE TT ----- S BTGGGGG TT EEE TT TTB S B-SS EEE TTS HHHHHTST--:
ExpBur :eebbbbbbbebebebeeeebbebbeebebbbbbebee-----eeeebbbbbeebeebebbbbbebeeeeebbeebeb-ebbeebebbebebbebbeee--:
queryA 552:GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-------------------------LFELKIIDLGLNNL-----NTLP-------------------: 602
:* * *** * * * * * * ** * * *** :
3wpi_A_1 598:GLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVV: 697
SecStr :TTTTTTTTTBTT EEE TTS S HHHHHTS TT EEE TTS GGGGGGSTT EEE TTS B S TT EEE TTS B :
ExpBur :eebeebbebbeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebebbeebebbeebebeebbbbebebeebe:
queryA 603:ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696
: * * ** ** * * *** ** ** * ** * * * ** * * * * * * * * *:
3wpi_A_1 698:PAFFALAVELKEVNLSHNILKTVDRSWFGPIVMQLTVLDVRSNPLHCACG--AAFVDLLLEVQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789
SecStr :TTSSTT TT EEE TTS S TTTTGGGGGT SEEE TT EE TT-- THHHHHHHSGGGSTTTTTTSBEEESTTTTTSBTTSS TT :
ExpBur :eebbeebeebeebbbbebebeebeeebbeebbeebeebbbeebebebeee--eebbebbbebeeebeebbbebebeeeeebeeebbbeeebeee:
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[assembly_id:1]
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