Protein Model on 3wpg_A_1_B_1
(TEMPLATE: 
3wpg
)Protein Model on 3wpg_A_1_B_1
(TEMPLATE: 3wpg
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [728 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
| 2 | b | B 1 (B) | polymer(polydeoxyribonucleotide) [11 base] | DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*GP*AP*A)-3') | 83G(K) 84F(W) 103V(E) 105N 108H(Y) 127E(V) 129H(F) 131M(D) 135I(Y) 136Q(Y) 137K 153D(S) 155S(K) 156H(Y) 177L 180N(Y) 201K(V) 203E(D) 209I(R) 220I(P) 221G(N) 252N(G) 254S(V) 256S(K) 278M(V) 282S 283Y(E) 302Y(K) 304F(N) 306E(S) 307Y(F) (identity: 12.9 %/29.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpg_A_1 identity=29.1% |
queryA 34:VADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------------LEPELCQKLPMLKVLNLQHNELSQ----: 113
: ** * * ** *** * * * * * * * * * ** * *** * :
3wpg_A_1 21:LVDCNWLFLKSVPRFXXXASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWNCPPTGXXXXXXSCHMTIEPRTFLAMRTLEELNLSYNGITTVPRL: 120
SecStr :EEE TTS SS --- SS EEE TT EE TTTTGGGTT EEE TTSB ------ EE TTTGGG TT EEE SB SS :
ExpBur :bbebbebebeebbee---eebeebeebbbbebebeebebebbeebeebebbbbeebbebee------ebebeeeeebbeebeebeebbbbebbbeebbeb:
Contact : bb b b b
queryA 114:----------------LSDKTFAFCTNLTELHLMSNSIQK------IKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE: 189
: * * * * * * * * * * * * * ** * * ** * * * * *:
3wpg_A_1 121:PSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNL--TKVPRQLP-PSLEYLLVSYNLIVKLGPE: 217
SecStr : TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS --SS SS -TT SEEE SS EE TT:
ExpBur :beebeebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeeebbeebeebbebbbeebeb--eebbeebb-eebeebebbbbebeebbee:
Contact : b b bb b b b bbb b bb b b
queryA 190:ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--N: 287
: * ** * * * ** * * * * * * * * * ** * **** * * :
3wpg_A_1 218:DLAQL--TSLRVLDVGGNCRR-----CDHAPNPCIECGQKSLHLHPETFHHL------SHLEGLVLKDSSLHTLNSSWFQGL--VQLSVLDLSENFLYES: 302
SecStr :TTTT --TT SEEE TTSSB ----- TT SS B SSSS EE TTTTTT ------TT EEE TTS SS GGGTTT --TT EEE TTSS TTH:
ExpBur :bbeeb--eebebbbbbbbbeb-----beeeeeeeeebeeeebebeeebbeeb------eebebbbbebbbbeebeebbbebb--eebeebbbbebbbbeb:
Contact : b b b bb b b b b bb
queryA 288:VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLK----RSFTKQSIS-LASLPKIDDFSFQW-------------LKCLEHLNME: 363
: * * * * * ** * ** * * ** *** * * :
3wpg_A_1 303:ITHTNAFQNLTRLRKLNLSFNYRKXXXXARLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVDLS: 402
SecStr :HHH TTSS S EEE TT ---- GGGGG TT EEE TT EE TTTTGGGTT TT EEE SS EE GGGGGT SS EEE :
ExpBur :bbebebbeebeebeebbbbebbee----eebebbebbeebebbebbbbbbbebebbbeebbeebbebeebebbbbeebebeebebbbbeebeebeebbbb:
Contact : b b bb
queryA 364:DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF------VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN: 457
:** * * * * * * * * * * * * * * * *:
3wpg_A_1 403:DNRISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRCKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLPLTN: 502
SecStr :SS SS ----------------------------------- TTTS EEE TTS SS GGGGTT TT EEE TTS B S S TT TT:
ExpBur :ebebebeee-----------------------------------eeebeeeebbbebbebebeebeeebbeebeebebbbbbebebebebebebbebbee:
queryA 458:IFEIYLSYNKYLQLTRNSFALVPSLQRLML----RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG: 553
: ** ** ** * ** * * * * * * * * * * ** * * * * :
3wpg_A_1 503:LQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQXXXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSHLNS-NSVRFLDFSGNGMGRMWDEG--GL: 599
SecStr : EEE SS B TTTTTT TT EEE TT ----- S BTGGGGG TT EEE TT TTB S EE-SS EEE TTS HHHHTTST--TT:
ExpBur :bebbbbbebebebeeeebbebbeebebbbbbebee-----eeeebbbbbeebeebebbbbbebeeeeebbeebeb-ebbeebbbbebbbbebbeee--ee:
queryA 554:PIYFLKGLSHLHILNLESNGFDEIPVEVFKD-------------------------LFELKIIDLGLNNL-----NTLP-------------------AS: 604
: * *** * * * * * * ** * * *** :
3wpg_A_1 600:YLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVVPA: 699
SecStr :TTTTTTEETT EEE TTS S HHHHHTS TT EEE TTS GGGGGG TT EEE TTS B S TT EEE TTS B TT:
ExpBur :bbebbeebeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebeebeebebbeebebeebbbbebebeebeee:
queryA 605:VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696
: * * ** ** * * *** ** ** * ** * * * ** * * * * * * * * *:
3wpg_A_1 700:FFALAVELKEVNLSHNILKTVDRSWFGPIVMQLTVLDVRSNPLHCACG--AAFVDLLLEVQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789
SecStr :SSTT TT EEE TTS S GGGTGGGGGT SEEE S EE TT-- SHHHHHHHTGGGSTTTTTTSBEEESTTTBTSBTTSS TT :
ExpBur :bbeebeebeebbbbebebeebeeebbeebbeebeebbbeebebebeee--bebbebbbebeeebebbbeebebeeeeebeeebbbeeebeee:
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[assembly_id:1]
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