Protein Model on 8ark_A_1 focusing on 435-th site
(TEMPLATE: 
8ark
)Protein Model on 8ark_A_1 focusing on 435-th site
(TEMPLATE: 8ark
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| FOCUSED SITES | template(8ark_A auth_asym_id:A) | ||||||
| SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
| 435 | D | 326 | 326 | L | e | 68.5 | |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
| 1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [440 aa] | ATP-dependent RNA helicase DBP2 :DBP2_YEAST | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8ark_A_1 identity=38.5% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
: * * * * ** ** * * * * * ****** * * :
8ark_A_1 112:ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI---------------------------------------: 172
SecStr : SGGGS HHHHHHHHTTT SS HHHHHHHHHHHTT EEEEE TT S HHHHHHHHH---------------------------------------:
ExpBur :beebebbbbeeebbeebeeeeeeebbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbbbbb---------------------------------------:
queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
: :
8ark_A_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPK: 288
: * :
8ark_A_1 173:------------------------------------------------------------------------------------VHINAQPLLAPGDGPI: 188
SecStr :------------------------------------------------------------------------------------HHHTTS TTT S:
ExpBur :------------------------------------------------------------------------------------bbbeebeebeeeebbb:
queryA 289:ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH: 388
: * * **** * * * *** * * * ** ***** * ** ** * ******* * * * :
8ark_A_1 189:VLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIV: 285
SecStr :EEEE SSHHHHHHHHHHHHHTTT---TTT B B SSS SSTTTTTTTS SEEEE HHHHHHTTTTTS TT EEEETTHHHHHHTT HHHHHHHH:
ExpBur :bbbbbbeeebbeebeebbeebbe---eeebebbbbbeeeeeeebeeebeeebbbbbbbbbbbbebeeeeebebebbbbbbbbbbbbbbeeebeeebeebb:
queryA 389:NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW: 485
: ** * *** ** * * * * * * * * *** * ** :
8ark_A_1 286:DQI------RPDRQTLMWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL--------ETASQDN-----------: 359
SecStr :TTS------ TTSEEEEEESS H-HHHHHHHHH SSEEEEE S S TTEEEEEEE STTHHHHHHHHH--------HHHSSST-----------:
ExpBur :eeb------beebbbbbbbbeeee-ebeebbeebbeeebebebeeeeeebeeebebebeebeeeebeeebeebb--------eebeeee-----------:
queryA 486:SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP: 585
: ** ** ** ** * * *** ** * * * ********* * :
8ark_A_1 360:---------EY-----------KTLIFASTKRMCDDITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGIN: 430
SecStr :---------T ----------- EEE SSSHHHHHHHHHHGGGT--------- EEE SSS SSTTSSSSTTTSSSSS EEEE TTT S :
ExpBur :---------eb-----------bbbbbbeeeeebeebbeebeeee---------bebbebbeeeeeeeeeebbeebeeeebbbbbbbeebbeeeebeebe:
queryA 586:YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
:**** * ******* *** * *** ** *:
8ark_A_1 431:YVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TEQNK: 469
SecStr :SEEESS SSHHHHHHHGGGSSSSS EEEEEEE- GGGH:
ExpBur :ebbbbbbbeebeebbebbebbbeeeeebbbbbbb-beebe:
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[assembly_id:1]
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