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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(4kbf_B auth_asym_id:B) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
77 | G | 73 | 73 | P | b | 3.9 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [365 aa] | Heat resistant RNA dependent ATPase :Q72GF3_THET2 |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4kbf_B_1 identity=37.1% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* *** * ** *** ** * * * * ** *** ** * * * * * : 4kbf_B_1 3:FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS---QERGRKPRALVLT--------------------: 79 SecStr :GGGS HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHH --- TT SEEEE --------------------: ExpBur :beebebbeebbeebeeeeeeebeebbeebbeebbeeebbbbbbeeeeebbbbbbbbbbeebeee---eeeebebbbbbbb--------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 4kbf_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303 : * ** * **** * : 4kbf_B_1 73:-----------------------------------------------------------------------------------PRALVLTPTRELALQVA: 89 SecStr :----------------------------------------------------------------------------------- SEEEE SSHHHHHHHH: ExpBur :-----------------------------------------------------------------------------------bbbbbbbbeeebbeebb: queryA 304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403 : * * ** * * * * ** **** * * * ** * ****** ** * * * : 4kbf_B_1 90:SELTAVA-----PHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR------QT: 178 SecStr :HHHHHH -----TTS EEEE SSS HHHHHHHHHH SEEEE HHHHHHHHHTTSS TT SEEEEESHHHHHHTT HHHHHHHHHTS TTS------EE: ExpBur :eebeebb-----ebbebbebbeeeeeeebeebbeebbbbbbbbbebbbebeeeebbebeebebbbbbebbebeeeebeeebeebbeebeeeb------bb: queryA 404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503 : **** * * * * * * * * ** * * ** : 4kbf_B_1 179:LLFSATLPSW-AKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVR----------GRLEVLSDLLYVA--------SP---------------------: 238 SecStr :EEE SS HH-HHHHHHHH SS EEEE EEEEE ST----------THHHHHHHHHHHH-------- ---------------------: ExpBur :bbbbbeeeeb-beebbeebbeeeeebeebeeeeeeeebebbebeee----------ebbeebbebbeee--------ee---------------------: queryA 504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : * * * *** * * **** ** * * * ** * ******* ** * * *** * *: 4kbf_B_1 239:---DRAMVFTRTKAETEEIAQGLLRLG---------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH: 324 SecStr :---S EEEEESSSHHHHHHHHHHHHHT--------- EE SSS STTTSSSTTSTTTTS EEEEETTTS SS BSEEEESS SSSHHHHH: ExpBur :---ebbbbbbeeeebbeebbebbeeee---------bebebbbeeeeeeebeebbebbeeeebebbbbbeebbeeeebeebbbbbbbbbbeeeebbee: |