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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | K 1 (F) | polymer(polypeptide(L)) [451 aa] | ATP-dependent RNA helicase DbpA :DBPA_ECOLI | |
2 | b | F 1 (G) | polymer(polyribonucleotide) | RNA (5'-D(*(POP))-R(P*GP*GP*AP*CP*AP*UP*AP*UP*GP*GP*CP*UP*GP*UP*UP*CP*GP*CP*CP*AP*UP*U)-3') | 294P 295S(T) 296R 325G 326G 328A(P) 329A(F) 346T 347P 348G 349R 352D 380Y(F) 514R(N) 515T 516K 546H 554R 572T 573D 574V 594D(W) (identity: 72.7 %/36.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7pli_K_1 identity=36.1% |
queryA 3:AFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101 :*** * * * * * ** * ** * ** * ****** ** * * * : 7pli_K_1 5:AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ-----------------------------: 75 SecStr :GGGGGS S HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHT TTS S -----------------------------: ExpBur :ebeebeebeeebeebbeebebeebeebbeebbebbbeeebbbbbbebbbebbbbbbbbbbeebebeeeebb-----------------------------: queryA 102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201 : : 7pli_K_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ: 301 : ** * **** *: 7pli_K_1 75:--------------------------------------------------------------------------------------QALVLCPTRELADQ: 88 SecStr :-------------------------------------------------------------------------------------- EEEE SSHHHHHH: ExpBur :--------------------------------------------------------------------------------------bbbbbbbbebbbee: Contact : bbb queryA 302:TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL: 401 : * * * ** * * * * ***** * * * ** **** * * ** * * : 7pli_K_1 89:VAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------ASR: 180 SecStr :HHHHHHHHGGGSTT E--EEE TTS HHHHHHHHTS SEEEE HHHHHHHHHHTS TT EEEEETHHHHTSHHHHHHHHHHHHHS ------SSS: ExpBur :bbebbeebbebeeebbb--bbbbbeeebeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeeeeeebeebbeebb------eeb: Contact : bb bb bbbb b b queryA 402:QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501 :* *** * * * * * * * * * * : 7pli_K_1 181:QTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----RLL: 238 SecStr :EEEEEES HH-HHHGGGGG SS EEEE S TT -----------SEEEEEEE STTHH-------------------------HHHH-----HHH: ExpBur :bbbbbbbbbeee-bbeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----ebb: queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : * ** ** ** * * ** * * * * ** * * * ******* ** * * * **: 7pli_K_1 239:SLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHXDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVH: 329 SecStr :HHH SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE - HHHHHHHHHHHHTTS SEEEE GGGSSS TT EEEESS SSHHHHHH: ExpBur :beeebebbbbbbbeeeebeebbeebeeeeb---------ebbbbb-eeebeebebbbbebebebbbbbbbbebbbbbbebeebebbbbbbbbeebebbbb: Contact : bbb b b bbb b queryA 602:RIGRVGRAERMGLAISLVATEKEK: 625 :**** ** ***** * * : 7pli_K_1 330:RIGRTARAGNSGLAISFCAPEEAQ: 353 SecStr :HHTTSS TT EEEEEEE GGGHH: ExpBur :bbbbbbbeeeebbbbbbbbeebee: |