[pdbjlvh2]Protein Model on 8v87_C_1_A

Protein Model on 8v87_C_1_A_1 (TEMPLATE: 8v87 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	C 1 (3)	polymer(polypeptide(L)) [656 aa]	ATP-dependent RNA helicase DBP10 :DBP10_YEAST
2	b		A 1 (1)	polymer(polyribonucleotide)	25S ribosomal RNA	297E 326G 327V(D) 329A(L) 349R 352D(H) 355S(V) 362S(K) 382D(E) (identity: 33.3 %/36.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8v87_C_1 identity=36.9%

queryA       288:KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM: 387
                : * *  ****** ** *  * *        **  *  **     *        *    ****   *     * *  *   * **** *   *     *  :
8v87_C_1     209:RAVILSPSRELAMQTFNVFKDFAR---GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNEL: 305
SecStr          :SEEEE SSHHHHHHHHHHHHHHHT---TS   EEEE TTS HHHHHHHHHT  SEEEE HHHHHHHHHHHT  GGG  EEEEE HHHHHHHTTHHHHHHH:    
ExpBur          :bbbbbbbeeeebeebbeebeebbe---eeebeebbbbeeeebeebbeebeeebbbbbbbbebbbebbebbeeebeebebbbbbbbbebbeeebeebbeeb:    
Contact         :         b                            bb b                   b  b  b      b                   b     

queryA       388:HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE: 487
                :    *         *    ****    *          *  * *  *  *                                                  :
8v87_C_1     306:LASLPTTR------QTLLFSATLPNSLVDFVKAGLVN-PVLVRLDAETKVSENLEMLFL-----------------------------------------: 357
SecStr          :HHHS SS ------EEEEE SS  HHHHHHHHHH SS- EEE  HHHHS  SS B  EE-----------------------------------------:    
ExpBur          :beebbeeb------bbbbbbbbbbeebbebbeeebee-eebbbbeeeeebbeebbbbbb-----------------------------------------:    

queryA       488:AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-------------------------------------------: 544
                :                                                                                                    :
8v87_C_1     358:---------------------------------------------------------SSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNXXXXXXX: 400
SecStr          :---------------------------------------------------------E  STTHHHHHHHHHHTTS      HHHHHHHHHH -------:    
ExpBur          :---------------------------------------------------------bbeeeebbbbbbbbbeebbebeeeeeeeeeeeeeee-------:    

queryA       545:--------------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH: 582
                :                                                                *    * **  *  *  *    *  ******* ** :
8v87_C_1     401:XXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSEKATILFVPTRHHVEYISQLLRDCGYLISY-IYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIP: 499
SecStr          :----------------------------  STT EEEE SHHHHHHHHHHHHHHHT  EEE-E TTS HHHHHHHHHHHHHTS SEEEE HHHHHTS   :    
ExpBur          :----------------------------eeeeebbbbbbbbbbbbebbbebbeebebbbbe-bbeebeeeeeeebbebbeeeebbbbbbbbebbbebebb:    

queryA       583:GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA: 620
                :    *** ***      *** **  **   * * * **:
8v87_C_1     500:MLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVA: 537
SecStr          :  SEEEESS  SSHHHHHHHHTTSSTTS   EEEEEE :    
ExpBur          :ebbbbbbbbbbbebbbbbebbbebbeeeeebbbbbbbb:

Protein Model on 8v87_C_1_A_1 (TEMPLATE: 8v87 )

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