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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(8ark_B auth_asym_id:B) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
285 | N | 185 | 185 | D | e | 35.2 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [440 aa] | ATP-dependent RNA helicase DBP2 :DBP2_YEAST |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8ark_B_1 identity=38.5% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * * * ** ** * * * * * ****** * * : 8ark_B_1 112:ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI---------------------------------------: 172 SecStr : SGGGS HHHHHHHHTTS SS HHHHHHHHHHHTT EEEEE TTSTTHHHHHHHHH---------------------------------------: ExpBur :beebebbebeeebbeebeeeeeeebbbbbbbbbbbbbbbbbbbbbbebbbbbbbbbbbbbb---------------------------------------: queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 8ark_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPK: 288 : * : 8ark_B_1 173:------------------------------------------------------------------------------------VHINAQPLLAPGDGPI: 188 SecStr :------------------------------------------------------------------------------------HHHHTS TT S: ExpBur :------------------------------------------------------------------------------------bbbeebeeeeeeebbb: queryA 289:ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH: 388 : * * **** * * * *** * * * ** ***** * ** ** * ******* * * * : 8ark_B_1 189:VLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIV: 285 SecStr :EEEE SSHHHHHHHHHHHHHHHT---TTT EEEE SSS TTTTTTTGGG SEEEE HHHHHTTTTTTSS SS EEEETTHHHHHHTT HHHHHHHH: ExpBur :bbbbbbeeebbebbeebbeebbe---eeebebbbbeeeeeeeebbeebeeebbbbbbbbeebbebeeeeebebebbbbbbbbbbbbbbeeebeeebeebb: queryA 389:NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW: 485 : ** * *** ** * * * * * * * * *** * ** : 8ark_B_1 286:DQI------RPDRQTLMWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL--------ETASQDN-----------: 359 SecStr :TTS------ TTSEEEEEESS H-HHHHHHHHH SSEEEEE S TTEEEEEEE GGGHHHHHHHHH--------HHHHTSS-----------: ExpBur :ebb------beebbbbbbbbeeee-ebeebbeebbeeebebebeeeeeebeeebebebbebeeeebeeebbebb--------eebeeee-----------: queryA 486:SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP: 585 : ** ** ** ** * * *** ** * * * ********* * : 8ark_B_1 360:---------EY-----------KTLIFASTKRMCDDITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGIN: 430 SecStr :--------- ----------- EEEE SSSHHHHHHHHTTTTTT--------- EEE SSS HHHHTTTSTTSSSSS EEEE TTTTTT TT : ExpBur :---------ee-----------bbbbbbeeeeebbebbeebeeee---------bebbbbbeeeeeebeeebeeebeeeebbbbbbbeebbeeeebeebb: queryA 586:YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625 :**** * ******* *** * *** ** *: 8ark_B_1 431:YVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TEQNK: 469 SecStr :EEEESS SSHHHHHHHGGGSS SS EEEEEEE- GGGH: ExpBur :bbbbbbbbeebeebbebbebbbeeeeebebbbbb-beebe: |