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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [448 aa] | Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 :PRP28_YEAST | |
2 | b | G 1 (A) | non-polymer(P6G) | HEXAETHYLENE GLYCOL | 376L(I) 377S(D) 378Q(L) 379G 413F(V) (identity: 20.0 %/31.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4w7s_B_1 identity=31.7% |
queryA 4:FSEMGVMPE--IAQAVEEMDWLLPTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR: 98 : * * * ** ** ** * * * ****** ** ** : 4w7s_B_1 49:WEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNUKQYRDFLGVASTGSGKTLAFVIPIL-------------------------------------: 111 SecStr :SSTT S HHHHHHHHTTS S HHHHHHHHHH TTT EEEE S TTHHHHHHHHHH-------------------------------------: ExpBur :beeeebbeeebbebbeeebeeeebeebbbbbbbbbbbeeebbbbbbbbbeeeebbbbbbbbbb-------------------------------------: queryA 99:GSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI: 198 : : 4w7s_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 199:DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--------------: 284 : : 4w7s_B_1 112:--------------------------------------------------------------------------------------IKUSRSPPRPPSLK: 125 SecStr :--------------------------------------------------------------------------------------HHHHTS HHHH: ExpBur :--------------------------------------------------------------------------------------bbeeeeeebeeeeb: queryA 285:--NAPKALIVEPSRELAEQTLNNIKQFKKYID---NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG: 379 : ***** * *** * * * * ** * * ** * ***** * * ** ******* *: 4w7s_B_1 126:IIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVUKQVETLVLDEADKUIDLG: 225 SecStr :HHH SEEEE SSHHHHHHHHHHHHHHHHHHHHSSS EEEE TTS HHHHHHHGGG SEEEE HHHHHHHHHTT TT EEEE SHHHHHHTT: ExpBur :eebbbbbbbbbbeeebbeebbeebeebbeebeeeeebebebbbbbeeeeeeebeeebeebbbbbbbbbebbeebbeeeebebebbebbbbbbbbebbeee: Contact : bbbb queryA 380:YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA: 479 : * * ** * * * ** * : 4w7s_B_1 226:FEDQVTNILTKVDINADSAVNRQTLUFTATUTPV-IEKIAAGYUQKPVYATIGVETGSEPLIQQVVEYADNDEDKF------------------------: 300 SecStr : HHHHHHHHHHHHHHS TT EEEEEESS HH-HHHHHHHH SS EEEEES EEEEEEE SSHHHHH------------------------: ExpBur :eeeebbebbeebeeeeeeebeebbbbbbeeeeee-beebbeeebeebbebebeeeeeeeeebebbbebbeeeeebb------------------------: Contact : b queryA 480:NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * * *** * * * * * ** * * * * * * ***** : 4w7s_B_1 301:-------KKLKPIVAKYD---------PPIIIFINYKQTADWLAEKF--------QKETNUKVTILHXXKSQEQREHSLQLFRTNKVQIUIATNVAARGL: 376 SecStr :-------HHHHHHHTTS ---------S EEEE S HHHHHHHHHHH--------HHHSS EEEE -- SSTHHHHHHHHTTSSSEEEE HHHHTT : ExpBur :-------eebeeebeeee---------eebbbbbeeeebbeebbebb--------eeebeeebbebb--eebeeeeebbebbeeeebbbbbbbeebbeee: queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625 :** * * * * ***** *** * * * * : 4w7s_B_1 377:DIPNVSLVVNFQISKKUDDYIHRIGRTGRAANEGTAVSFVSAAEDE: 422 SecStr : BSEEEESS SSHHHHHHHHTTBS TT EEEEEEE SSS H: ExpBur :ebeebebbbbbbbbeebeebeebbebbbeeeeebbbbbbbbeebee: |