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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [376 aa] | ATP-dependent RNA helicase DDX39A :DX39A_HUMAN | |
2 | b | D 1 (A) | non-polymer(PO4) | PHOSPHATE ION | 308Q(R) 549R(M) 550K(A) 551P(Q) 554R 577R (identity: 33.3 %/32.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8iju_A_1 identity=32.8% |
queryA 2:AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101 : * ** * * * * ** * *** * * *** * * : 8iju_A_1 13:SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ---------------------------------------: 73 SecStr : HHHHTT HHHHHHHHHTT S HHHHHHHHHHTTT EEEE TTBSHHHHHHHHHHH---------------------------------------: ExpBur :ebbeebebeeebeebbeebebeebbebbeebbeebbeeebbbbbbbebbbbbbbbbbbbbb---------------------------------------: queryA 102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201 : : 8iju_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK----------ALI: 291 : * : 8iju_A_1 74:---------------------------------------------------------------------------------------QIEPVNGQVTVLV: 86 SecStr :---------------------------------------------------------------------------------------H TT EEE: ExpBur :---------------------------------------------------------------------------------------ebeeeeeebbbbb: queryA 292:VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ: 390 : **** * * ** * ** ** * ******* ** * * **** * * * * : 8iju_A_1 87:MCHTRELAFQISKEYERFSKYM--PSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD---MRRDVQE: 181 SecStr :E S HHHHHHHHHHHHHHTTT --TT EEEESSSS HHHHHHHHHHH SEEEE HHHHHHHHHTTSS TT EEEESSHHHHHHSHH---HHHHHHH: ExpBur :bbeeeebbebbbebbeebbeeb--eebeebebbbeeeeeebeeebeeebbbbbbbbbeebbebbeeebbebeebebbbbbbbbebbeeee---beeebee: Contact : b queryA 391:IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK: 490 :* * * * **** * * * * * * * * * * * * : 8iju_A_1 182:IFRLTPHEK--QCMMFSATL-SKDIRPVCRKFMQDPMEVFVDDETKL--TLHG---------------LQQYYVKLKD--SEKNRK--------LFDLLD: 251 SecStr :HHHHS SS --EEEEEES - TTTHHHHHTT SS EEEEHHHHHHH--HGGG---------------SEEEEEE H--HHHHHH--------HHHHHH: ExpBur :bbeebeeeb--bbbbbbebb-eeebbebbeebbeebbebbbbeebee--ebee---------------bebeebebee--eebeee--------bbebbe: queryA 491:ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV: 590 : * * *** * * * * * * ** ** * * * ** ** * * * : 8iju_A_1 252:VLE------------FNQVIIFVKSVQRCMALAQLLVEQN---------FPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNY: 330 SecStr :HTT------------TS EEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHHSS EEEE TTTTTTSB BSEEEES: ExpBur :ebe------------eebbbbbbeeeeebeebbeebeeee---------bebbbbbeebebeebbeebeebeeeeeebbbbbeebbeebebeebbbbbbb: Contact : bbb b b queryA 591:TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE: 624 : * * ** * ** **** * * : 8iju_A_1 331:DMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND: 364 SecStr :S SSHHHHHHHHTTBS TTS EEEEEE SHHH: ExpBur :bbbeebebbbbbbbbbbeeeeebbbbbbbbeeeb: |