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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [455 aa] | Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 :PRP28_YEAST | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [448 aa] | Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 :PRP28_YEAST | 295S(T) 296R 325G 326G 327V(H) 328A(S) 349R 374G(K) 377S(D) 378Q(L) 379G 380Y(F) 382D 383F(Q) 612M(E) (identity: 40.0 %/32.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4w7s_A_1 identity=32.0% |
queryA 4:FSEMGVMPE--IAQAVEEMDWLLPTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR: 98 : * * * ** ** ** * * * ****** ** ** : 4w7s_A_1 49:WEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNUKQYRDFLGVASTGSGKTLAFVIPIL-------------------------------------: 111 SecStr :SSTT S HHHHHHHHHTT SS HHHHHHHHHHS TT EEEE TTSSHHHHHHHHHH-------------------------------------: ExpBur :beeeebbeeebbebbeeebeeeebeebbbbbbbbbbbeeeebbbbbbbeeeeebbbbbbbbbb-------------------------------------: queryA 99:GSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI: 198 : : 4w7s_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 199:DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--------------: 284 : : 4w7s_A_1 112:--------------------------------------------------------------------------------------IKUSRSPPRPPSLK: 125 SecStr :--------------------------------------------------------------------------------------HHHHTS HHHH: ExpBur :--------------------------------------------------------------------------------------bbeeeeeebeeeeb: queryA 285:--NAPKALIVEPSRELAEQTLNNIKQFKKYID---NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG: 379 : ***** * *** * * * * ** * * ** * ***** * * ** ******* *: 4w7s_A_1 126:IIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVUKQVETLVLDEADKUIDLG: 225 SecStr :HHH SEEEE SSHHHHHHHHHHHHHHHHHHHHSSS EEEE TT HHHHHHHHTT SEEEE HHHHHHHHHTT - EEEETTHHHHHHTT: ExpBur :eebbbbbbbbbbeeebbeebbeebeebbeebeeeeebebbbbbbbeebeeeebeeebeebbbbbbbbbebbbebbeeeee-bebbebbbbbbbbebeeee: Contact : bb bbbb b b bbb queryA 380:YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA: 479 : * * ** * * * ** * : 4w7s_A_1 226:FEDQVTNILTKVDINADSAVNRQTLUFTATUTPV-IEKIAAGYUQKPVYATIGVETGSEPLIQQVVEYADNDEDKF------------------------: 300 SecStr : HHHHHHHHHHHHHH TT EEEEEESS HH-HHHHHHHH SS B - BSS EEEEEEEE SSHHHHH------------------------: ExpBur :eeeebeebbeebeeeeeeebebbbbbbbebeeee-beebbeeebeebbe-ebeeeeeeeeebebbbebbeeeeebb------------------------: Contact :b bb queryA 480:NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * * *** * * * * * *** * * * * * * ***** : 4w7s_A_1 301:-------KKLKPIVAKYD---------PPIIIFINYKQTADWLAEKF--------QKETNUKVTILHGSKSQEQREHSLQLFRTNKVQIUIATNVAARGL: 376 SecStr :-------HHHHHHHTTS ---------S EEEE SSHHHHHHHHHHH--------HHH S EEEE S S HHHHHHHHHHHHTTSSSEEEE TTTTTTS: ExpBur :-------eebeebbeeee---------eebbbbbeeeebbeebbebb--------eeeeebebbbbeeeeeeeebeebbebbeeeebbbbbbbeebbeee: queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625 :** * * * * ***** *** * * * * : 4w7s_A_1 377:DIPNVSLVVNFQISKKUDDYIHRIGRTGRAANEGTAVSFVSAAEDE: 422 SecStr : BSEEEESS SSHHHHHHHHTTBS TT EEEEEEEE S S H: ExpBur :ebbebebbbbbbbbeebebbeebbebbbeeeeebbbbbbbbeebee: Contact : b |