[pdbjlvh2]Protein Model on 5awc_D

Protein Model on 5awc_D_1 (TEMPLATE: 5awc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(TLR8_HUMAN)	D 1 (D)	polymer(polypeptide(L)) [724 aa]	Toll-like receptor 8 :TLR8_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5awc_D_1 identity=92.5%

queryA        33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132
                :******        ***********************************     **************            ********************:
5awc_D_1      11:SYPCDEXXXXXXXXAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNEXXXXXQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLL: 110
SecStr          :  SSB -------- B  SS  SS      SS S EE  S    EE   -----     EEEES S  ------------  EE TTSSTT TT  EEEE:    
ExpBur          :eebbbe--------eebbebebeebbeeeeeebeebebbebebeebeee-----eebbbbbbbebeee------------ebebeeebbeeeeebeebbb:    

queryA       133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232
                :****************************************************************************************************:
5awc_D_1     111:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 210
SecStr          :ESS  SS  S   TT  EEE  S       SHHHHT TT SEEE  SSS TT         TTSGGGT    EEE  SS   S  SS  TT  EEE  SS:    
ExpBur          :bebebeebbeebbebbbbbbbbebebebbbeebbeebeebeebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbb:    

queryA       233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332
                :****************************************************************************************************:
5awc_D_1     211:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 310
SecStr          :   EE GGGGSS TT  EEE  SSS   TT SS     GGG   EE TTSSSS TT  EEE  SS      GGGTTT S   EEE  SS THHHHHS GG:    
ExpBur          :ebeebeeebbeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebbebbeebeb:    

queryA       333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432
                :****************************************************************************************************:
5awc_D_1     311:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 410
SecStr          :GGG TT  EEE      TT   SS    TTTTS TT  EEE TT   SEE GGGGTTTTT TT  EEE  SS   EE GGGGTSSS   EEE  SS    :    
ExpBur          :beebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebebee:    

queryA       433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532
                :                           *************************************************************************:
5awc_D_1     411:XXXXXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 510
SecStr          :---------------------------   TTS SSS  S SS HHHHTTSEEEE  SS   S  TTTTTT   EEEEE TTS       S TTTTSTT :    
ExpBur          :---------------------------eeeeeeebbbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebeeb:    

queryA       533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632
                :****************************************************************************************************:
5awc_D_1     511:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 610
SecStr          : EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TT      SS    EESS  EEE  SS HHHHT TT  TTT:    
ExpBur          :ebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebeebeeeeebebebbeebbbbbbbbeebbeeebeebb:    

queryA       633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732
                :****************************************************************************************************:
5awc_D_1     611:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 710
SecStr          :TTTTEETT  EEE TTS  S   HHHHHTS TT SEEE  SS      GGGGGG TT  EEE  SS      TTGGGT S   EEE  SS      SS T:    
ExpBur          :ebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbebbebeebbeebeebbebbebbbbbebebeebbeebe:    

queryA       733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIV: 815
                :**********************       ******************************************************:
5awc_D_1     711:SEVSSLKHLDLSSNLLKTINKSXXXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIV: 793
SecStr          :TT SS  EEE  SS  S     -------    EEE TT     SSSTHHHHHHHHH TTSB   TTTSB   SSSSTT B  :    
ExpBur          :eebeebeebbbbebebeebeee-------eebeebbbbebebeeeeebeebeebbeeeeebebbebbbbebeeeeeeeeebbe:

Protein Model on 5awc_D_1 (TEMPLATE: 5awc )

Input Residue Numbers for Focused Sites