Protein Model on 6wml_D_1_RA_1 (TEMPLATE: 6wml )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) D 1 (D) polymer(polypeptide(L)) [708 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b RA 1 (D) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 338R 367L 368S 370R 395N (identity: 100.0 %/90.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6wml_D_1 identity=90.4%
queryA        33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132
                :*******      ******************  ***************        ***********             ********************:
6wml_D_1      11:SYPCDEKXXXXXXIAECSNRRLQEVPQTVGKXXTELDLSDNFITHITNXXXXXXXXLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLL: 110
SecStr          :  SSEE ------ EE TTS  SS  S    -- EEE TTS   EE  --------  EEE TT   -------------  EE TTTTTT TT  EEE :    
ExpBur          :eebbeee------eeebeebebeeeeeeeee--ebeebbebebeeeee--------eebeebbebee-------------ebeeeeeeeeeeeebbbbbe:    

queryA       133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232
                :*******************************  *******************************************************************:
6wml_D_1     111:EDNQLPQIPSGLPESLTELSLIQNNIYNITKXXISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 210
SecStr          : SS   SS SS  S  SEEE TTS   EE  -- TT    SEEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  SS  TT  EEE TTS:    
ExpBur          :bbbebeebeeeebeebebebbbbbebeebee--ebebeebbebebbbbbbeeeeeeebeeeeebbbebeebbbbbbbbbbbeebbeebbebbeebebbbb:    

queryA       233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332
                :****************************************************************************************************:
6wml_D_1     211:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 310
SecStr          :   EE TTSSSS TT  EEE TTSS   TT SS     TTT   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS GG:    
ExpBur          :ebeebbeeebbebeebebbbbbbbbbbbeeeebebeebeeeeebebeeebbeebeebeebbbbbbbbeebbebbbeebeebebbbbbebebbebbeebeb:    

queryA       333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432
                :****************************************************************************************************:
6wml_D_1     311:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 410
SecStr          :GGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGGGGTT SS  EEE  SS   EE GGGGTS SS  EEE  SS    :    
ExpBur          :beebeebeebbbbbbbeeeeeeeebebbeebeebebbebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebee:    
Contact         :     b                            bb b                        b                                     

queryA       433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532
                :*                         **************************************************************************:
6wml_D_1     411:LXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 510
SecStr          : -------------------------  S TTS SSS  S SS HHHHTTS EEE  SS   S  TTSSTT    SEEE TTS       S TTSSSTT :    
ExpBur          :e-------------------------eebeeeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebeeb:    

queryA       533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632
                :****************************************************************************************************:
6wml_D_1     511:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 610
SecStr          : EEE  SS      TTTTTT TT  EEE  S HHHHS TTS    GGGGG SS  EEE TTS     SS     BSS  EEE TTS HHHHT TT  TTT:    
ExpBur          :ebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebeebbeeeebebebbeebbbbbbbbeebbeeeeeebb:    

queryA       633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732
                :*************************************************************************************************   :
6wml_D_1     611:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSXXX: 710
SecStr          :TTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT S   EEE  SS       ---:    
ExpBur          :ebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeeeeeebeebbebbbbbbbbebebeeeee---:    

queryA       733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIV: 815
                :  *********************       ***********************     ****************  *******:
6wml_D_1     711:XXVSSLKHLDLSSNLLKTINKSAXXXXXXXKLSMLELHGNPFECTCDIGDFRRXXXXXLNVKIPRLVDVICASPXXQRGKSIV: 793
SecStr          :--  S  EEE TTS      TT -------   EEE TT  EE STTHHHHH -----  SB S TTTSBEEES--STTSB  :    
ExpBur          :--eeebbebbbbebebeeeeeee-------eeeeebbeebebbeeeebeeeee-----eeeeeebbbebbbeee--eeeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123