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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [724 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | P 1 (P) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 476K 478Q 534Y 558V 560D 562S 588V 590N 612E 614V (identity: 100.0 %/92.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5awc_D_1 identity=92.5% |
queryA 33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132 :****** *********************************** ************** ********************: 5awc_D_1 11:SYPCDEXXXXXXXXAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNEXXXXXQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLL: 110 SecStr : SSB -------- B SS SS SS S EE S EE ----- EEEES S ------------ EE TTSSTT TT EEEE: ExpBur :eebbbe--------eebbebebeebbeeeeeebeebebbebebeebeee-----eebbbbbbbebeee------------ebebeeebbeeeeebeebbb: queryA 133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232 :****************************************************************************************************: 5awc_D_1 111:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 210 SecStr :ESS SS S TT EEE S SHHHHT TT SEEE SSS TT TTSGGGT EEE SS S SS TT EEE SS: ExpBur :bebebeebbeebbebbbbbbbbebebebbbeebbeebeebeebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbb: queryA 233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332 :****************************************************************************************************: 5awc_D_1 211:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 310 SecStr : EE GGGGSS TT EEE SSS TT SS GGG EE TTSSSS TT EEE SS GGGTTT S EEE SS THHHHHS GG: ExpBur :ebeebeeebbeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebbebbeebeb: queryA 333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432 :****************************************************************************************************: 5awc_D_1 311:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 410 SecStr :GGG TT EEE TT SS TTTTS TT EEE TT SEE GGGGTTTTT TT EEE SS EE GGGGTSSS EEE SS : ExpBur :beebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebebee: queryA 433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532 : *************************************************************************: 5awc_D_1 411:XXXXXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 510 SecStr :--------------------------- TTS SSS S SS HHHHTTSEEEE SS S TTTTTT EEEEE TTS S TTTTSTT : ExpBur :---------------------------eeeeeeebbbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebeeb: Contact : b b queryA 533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632 :****************************************************************************************************: 5awc_D_1 511:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 610 SecStr : EEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TT SS EESS EEE SS HHHHT TT TTT: ExpBur :ebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebeebeeeeebebebbeebbbbbbbbeebbeeebeebb: Contact : b b b b b b b b queryA 633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732 :****************************************************************************************************: 5awc_D_1 611:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 710 SecStr :TTTTEETT EEE TTS S HHHHHTS TT SEEE SS GGGGGG TT EEE SS TTGGGT S EEE SS SS T: ExpBur :ebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbebbebeebbeebeebbebbebbbbbebebeebbeebe: queryA 733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIV: 815 :********************** ******************************************************: 5awc_D_1 711:SEVSSLKHLDLSSNLLKTINKSXXXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIV: 793 SecStr :TT SS EEE SS S ------- EEE TT SSSTHHHHHHHHH TTSB TTTSB SSSSTT B : ExpBur :eebeebeebbbbebebeebeee-------eebeebbbbebebeeeeebeebeebbeeeeebebbebbbbebeeeeeeeeebbe: |