Protein Model on 5az5_D_1_O_1 (TEMPLATE: 5az5 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) D 1 (D) polymer(polypeptide(L)) [746 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b O 1 (O) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 426S 475I 476K 479C 489S 490L 511N 513S 534Y 536D (identity: 100.0 %/94.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5az5_D_1 identity=94.9%
queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**********    ********************************************************            ******************:
5az5_D_1       9:SRSYPCDEKKXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :    SSB   ---- EEE  SS  SS  S   TT SEEE  SS   EE TTTTTT TT  EEE  S S  ------------  EE TTTTTT TT  EE:    
ExpBur          :ebeebbbbee----eebebeebebeebbeebeeebeebebbebebeebeeebbeebeebbebbbbbbeee------------ebebeebbbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
5az5_D_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT SEEE  SSS TT S    EE TTTTTT TT  EEE  SS  SS  S   TT SEEE T:    
ExpBur          :bbbbbebeebbeebbeebeebbbbbbebbebbeebbbebeebebbebbbbbeeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
5az5_D_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE GGGGTT TT  EEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHH :    
ExpBur          :bbebeebbeeebeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
5az5_D_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE  SS   EE GGGGGG SS  EEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbebbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebeb:    
Contact         :                                                                                               b    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :**                        **************************************************************************:
5az5_D_1     409:SPXXXXXXXXXXXXXXXXXXXXXXXXTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :  ------------------------   SS TTS SSS  S SS HHHHTTS EEE TTS   S  TTTTTT    SEEE TTS       S TTTTST:    
ExpBur          :ee------------------------eeeebebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    
Contact         :                                            bb  b         bb                    b b                 

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
5az5_D_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG TT  EEE TT      SS     BSS  EEE  SS HHHHT TT  T:    
ExpBur          :ebebbbbbebebebeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebbbeebeeeeebebebbeebbbbbbbbeebbeeebee:    
Contact         :   b b                                                                                              

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
5az5_D_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S  TTT S  SEEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebbeb:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816
                :**************************************************************************************:
5az5_D_1     709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 794
SecStr          : TTT SS  EEE  SS      S   S  TTSS SEEE TT  EE SGGGHHHHHHHHH TTSB   GGG BEEESSS SS BTT :    
ExpBur          :bbbebeebeebbbbebebeebeebeeeeeebbebeebbbbebebebeeebbebeebbeebeebebbebbebebeeeeeeeeebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123