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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [746 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | BA 1 (D) | non-polymer(06S) | O-[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-2-({[(S)-({(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-[(thiophosphonooxy)methyl]tetrahydrofuran-3-yl}oxy)(sulfanyl)phosphoryl]oxy}methyl)-4-hydroxytetrahydrofuran-3-yl] dihydrogen (S)-phosphorothioate | 291Y 314K 315V 341I 343D 373H 375R 400N 466N 469H 470F 471T 472R 474L (identity: 100.0 %/95.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4r09_D_1 identity=95.0% |
queryA 32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131 :********** ******************************************************* ********************: 4r09_D_1 10:RSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109 SecStr : SSEEE --- EEEEESS SS S TT SEEEEESS EE SGGG SS EEE S ------------ EE TTTT S TT EEE: ExpBur :eeebbbbeee---eebebbebebeebbeeebeebeebebbebebeebbeebbeebeebeebbbbebee------------ebbebeeebbeebeebebbb: queryA 132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231 :****************************************************************************************************: 4r09_D_1 110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209 SecStr : SS SS S TT EEE SS EE STTTTT TT EEE SSS TT S EE TTTTTT TT EEE SS SS S TT SEEE TT: ExpBur :bbbbebeebbeebbebbbebbbbbbebeebbeebbbebeebeebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb: queryA 232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331 :****************************************************************************************************: 4r09_D_1 210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309 SecStr :S EE TTTTTT TT EEE SSS TT SS STTT EE TTTTTT TT EEE TTS SS GGGGSS TT EEE SS HHHHHH G: ExpBur :bebeebeeebbeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebeebbbbebebbebbeebe: Contact : b bb queryA 332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431 :****************************************************************************************************: 4r09_D_1 310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409 SecStr :GGGG TT EEE S TT SS GGGGG TT EEE S SEE GGGGGGGTT SS EEE S EE GGGGGS SS EEE SS : ExpBur :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbebbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebe: Contact : b b b b b queryA 432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531 :** **************************************************************************: 4r09_D_1 410:PLXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509 SecStr : ------------------------ SS TTS SSS S SS HHHHTTS EEE SS S TTSSTT SEEE SS S TTTTSTT: ExpBur :be------------------------eeebebeeeebeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee: Contact : b bbbb b queryA 532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631 :****************************************************************************************************: 4r09_D_1 510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609 SecStr : SEEE SS TTTTTT TT EEE S HHHHT TTS GGGTT SS EEE TT SS BSS EEE SS HHHHT TT TT: ExpBur :bebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebbbebbeeeeebebebbeebbbbbbbbeebbeeeeeeb: queryA 632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731 :****************************************************************************************************: 4r09_D_1 610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709 SecStr :TTTTTTBTT EEE SS S HHHHHTS TT SEEE SS GGGGGG TT EEE SS S HHHH SS EEE SS SSS: ExpBur :bebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebbebbebbebbbbbebebeebbeeb: queryA 732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816 :*************************************************************************************: 4r09_D_1 710:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 794 SecStr :SSS S EEE TTS S SGGG S EEE TT B SSS SHHHHHHHH SSB S GGGSBBSSSSSSTTSBS : ExpBur :beebeebebbbbbebebebbeeebbeeeeeeebeebbbeebebebeeebbebeebbeebeebebeebbbbebeebeeeeeebbee: |