Protein Model on 4r09_D_1_AA_1 (TEMPLATE: 4r09 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) D 1 (D) polymer(polypeptide(L)) [746 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b AA 1 (D) non-polymer(URI) URIDINE 348Y 351G 352S 353Y 378V 405F 429R (identity: 100.0 %/95.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4r09_D_1 identity=95.0%
queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :**********   *******************************************************            ********************:
4r09_D_1      10:RSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr          :   SSEEE  --- EEEEESS  SS  S   TT SEEEEESS   EE SGGG   SS  EEE  S   ------------   EE TTTT S TT  EEE:    
ExpBur          :eeebbbbeee---eebebbebebeebbeeebeebeebebbebebeebbeebbeebeebeebbbbebee------------ebbebeeebbeebeebebbb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
4r09_D_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  S   TT  EEE  SS   EE STTTTT TT  EEE  SSS TT S    EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TT:    
ExpBur          :bbbbebeebbeebbebbbebbbbbbebeebbeebbbebeebeebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
4r09_D_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTTT TT  EEE  SSS   TT SS    STTT   EE TTTTTT TT  EEE TTS  SS  GGGGSS TT  EEE  SS  HHHHHH G:    
ExpBur          :bebeebeeebbeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebeebbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
4r09_D_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SS    GGGGG TT  EEE  S   SEE GGGGGGGTT SS  EEE  S    EE GGGGGS SS  EEE  SS   :    
ExpBur          :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbebbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebe:    
Contact         :                b  bbb                        b                          b                       b  

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :**                        **************************************************************************:
4r09_D_1     410:PLXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :  ------------------------  SS TTS SSS  S SS HHHHTTS EEE  SS   S  TTSSTT    SEEE  SS       S TTTTSTT:    
ExpBur          :be------------------------eeebebeeeebeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
4r09_D_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          : SEEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGTT SS  EEE TT      SS     BSS  EEE  SS HHHHT TT  TT:    
ExpBur          :bebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebbbebbeeeeebebebbeebbbbbbbbeebbeeeeeeb:    

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
4r09_D_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS      GGGGGG TT  EEE  SS      S HHHH SS  EEE  SS      SSS:    
ExpBur          :bebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebbebbebbebbbbbebebeebbeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816
                :*************************************************************************************:
4r09_D_1     710:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 794
SecStr          :SSS  S  EEE TTS  S   SGGG   S     EEE TT  B  SSS SHHHHHHHH  SSB S GGGSBBSSSSSSTTSBS  :    
ExpBur          :beebeebebbbbbebebebbeeebbeeeeeeebeebbbeebebebeeebbebeebbeebeebebeebbbbebeebeeeeeebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123