[pdbjlvh2]Protein Model on 5awc_C

Protein Model on 5awc_C_1 (TEMPLATE: 5awc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(TLR8_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [727 aa]	Toll-like receptor 8 :TLR8_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5awc_C_1 identity=92.4%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :*********     *******************************************************             ******************:
5awc_C_1       9:SRSYPCDEKXXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :   SSS B ----- EEE  SS  SS  TTS TT  EEE TTS   EE TTTTTT  S  EEE  S   -------------  EE TTTTTT TT  EE:    
ExpBur          :ebeebbbee-----eebebeebebeebbeebeeebeebebbebebeebeeebbeebeebbebbbbebee-------------ebebeebbbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
5awc_C_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E  SS  SS  SS  TT  EEE  SS   EE HHHHTT TT SEEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  SS  TT  EEE T:    
ExpBur          :bbbebebeebbeebbebbeebbbbbbebeebbeebbbebeebebbebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
5awc_C_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE GGGGTT TT  EEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHH :    
ExpBur          :bbebeebbeeebeebeebebbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
5awc_C_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE  SS   EE GGGGGGSS   EEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :**                         *************************************************************************:
5awc_C_1     409:SPXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :  -------------------------  SS TTS SSS  S SS HHHHTTS EEE TTS   S  TTTTTT    SEEE  SS       S TTTTST:    
ExpBur          :ee-------------------------eeebebeeeebeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebeeebbeebe:    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
5awc_C_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS     BSS  EEE TTS HHHHT TT  T:    
ExpBur          :ebebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbeeeeebebebbeebbbbbbbbeebbeeeeee:    

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :**************************************************************************************************  :
5awc_C_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPXX: 708
SecStr          :TTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S  GGG SS  EEE  SS      --:    
ExpBur          :bbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbebbebeebbeeeeebbebbebbbbbebebeeee--:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 817
                :       *****************        *******************************************************:
5awc_C_1     709:XXXXXXXLKHLDLSSNLLKTINKSXXXXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 795
SecStr          :-------  EEE  SS        --------   EEE TT  EE STTTHHHHHHHHH SSS    GGGSBEEESTTTTTSBTT  :    
ExpBur          :-------eeebbbbebebeebeee--------ebeebebbebebebeeebbebeeebeeeeebebbebbbbebbeeeebeeebbeee:

Protein Model on 5awc_C_1 (TEMPLATE: 5awc )

Input Residue Numbers for Focused Sites